Alternatives and similar repositories for minialign

Users that are interested in minialign are comparing it to the libraries listed below

• genome / breakdancer
  SV detection from paired end reads mapping
  ☆117Updated 5 years ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated 11 months ago
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆97Updated 6 months ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆194Updated this week
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆129Updated 10 months ago
• parklab / bamsnap
  ☆120Updated 7 months ago
• jstjohn / SeqPrep
  Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
  ☆143Updated 8 years ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆133Updated 4 years ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆54Updated 9 years ago
• mcfrith / last-rna
  ☆49Updated 2 years ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆85Updated 6 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆98Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 3 years ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆67Updated 7 years ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 6 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 2 years ago
• marbl / HG002
  A complete diploid human genome
  ☆120Updated 4 months ago
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆91Updated 2 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆149Updated 3 months ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆107Updated 2 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆200Updated last year
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆171Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated last month