Alternatives and similar repositories for minialign

Users that are interested in minialign are comparing it to the libraries listed below

• genome / breakdancer
  SV detection from paired end reads mapping
  ☆118Updated 6 years ago
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆106Updated 8 years ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆138Updated 4 months ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆110Updated 3 months ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated last year
• mozack / abra2
  ABRA2
  ☆95Updated 3 years ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆115Updated 7 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆195Updated last month
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆66Updated 7 years ago
• jstjohn / SeqPrep
  Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
  ☆145Updated 9 years ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆102Updated last month
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 4 years ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆88Updated 7 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆101Updated 3 years ago
• Illumina / PlatinumGenomes
  The Platinum Genomes Truthset
  ☆90Updated 8 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆74Updated 9 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆55Updated 10 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• statgen / bamUtil
  ☆92Updated 4 years ago
• richarddurbin / pbwt
  Implementation of Positional Burrows-Wheeler Transform for genetic data
  ☆112Updated 2 months ago
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆176Updated 4 years ago
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆123Updated 3 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆204Updated 4 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆126Updated 2 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated last year