MariaNattestad / Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
☆141Updated 6 months ago
Alternatives and similar repositories for Assemblytics
Users that are interested in Assemblytics are comparing it to the libraries listed below
Sorting:
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆95Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated 11 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆162Updated last year
- A genome completeness evaluation tool based on miniprot☆211Updated last week
- Nanopore data assembler☆151Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆203Updated last month
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆223Updated 4 months ago
- source code for EVM☆109Updated 5 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Python programs for processing GFF3 files☆97Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 6 months ago
- Jasmine: SV Merging Across Samples☆213Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆145Updated 2 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- Constructing a pangenome gene graph☆186Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆201Updated last year
- Pangenome-based genome inference☆127Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆212Updated last month
- Comparison of multiple long read datasets☆129Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆91Updated last week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆122Updated 6 months ago
- accurate LiftOver tool for new genome assemblies☆125Updated 9 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆136Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆114Updated 2 years ago