MariaNattestad / AssemblyticsLinks
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
☆145Updated 5 months ago
Alternatives and similar repositories for Assemblytics
Users that are interested in Assemblytics are comparing it to the libraries listed below
Sorting:
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- source code for EVM☆119Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 9 months ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Pangenome-based genome inference☆149Updated last week
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- Nanopore data assembler☆162Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Hierarchical Alignment Format☆173Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Python programs for processing GFF3 files☆101Updated last year
- Constructing a pangenome gene graph☆200Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- Collection of tools for the analysis of CpG data☆99Updated 5 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆163Updated 7 months ago
- accurate LiftOver tool for new genome assemblies☆139Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 7 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆162Updated 8 months ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Updated 5 years ago