Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
☆147Mar 19, 2026Updated 2 months ago
Alternatives and similar repositories for Assemblytics
Users that are interested in Assemblytics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome browser designed for complex structural variants and long reads.☆301Jun 6, 2025Updated 11 months ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 3 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Chromosome-level scaffolding using multiple references☆167Sep 8, 2024Updated last year
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated 4 months ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago
- ☆44May 8, 2024Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆417Dec 1, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆467Mar 17, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural variation caller using third generation sequencing☆654Updated this week
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆909May 2, 2026Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆78Aug 30, 2016Updated 9 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆353Jul 19, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SplitThreader has moved into Ribbon!☆67Aug 28, 2024Updated last year
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 2 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- ☆286Dec 29, 2025Updated 4 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆81Apr 30, 2021Updated 5 years ago
- A tool to circularize genome assemblies☆256Apr 6, 2024Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆177Apr 22, 2026Updated 3 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆250Dec 16, 2025Updated 5 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174May 30, 2021Updated 4 years ago
- haplotypic duplication identification tool☆285Oct 30, 2025Updated 6 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- A tutorial in Python where all the examples teach students about biology. Written for high school students with no previous experience.☆19Aug 15, 2015Updated 10 years ago