Alternatives and similar repositories for mccortex

Users that are interested in mccortex are comparing it to the libraries listed below

• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆76Updated 3 weeks ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆97Updated 2 months ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆61Updated 6 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆48Updated 4 years ago
• adigenova / wengan
  An accurate and ultra-fast hybrid genome assembler
  ☆85Updated last year
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆129Updated 2 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆150Updated 4 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆94Updated 7 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• cschin / Peregrine
  Peregrine: Fast Genome Assembler Using SHIMMER Index
  ☆101Updated 3 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆105Updated 2 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 9 months ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆85Updated 7 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 7 months ago
• twolinin / longphase
  ☆112Updated last month
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆102Updated 4 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated 8 months ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆110Updated last week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆100Updated 3 weeks ago