lh3 / minimapLinks
This repo is DEPRECATED. Please use minimap2, the successor of minimap.
☆106Updated 8 years ago
Alternatives and similar repositories for minimap
Users that are interested in minimap are comparing it to the libraries listed below
Sorting:
- Find all significant local alignments between reads☆140Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 10 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Updated 7 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆87Updated 7 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 3 weeks ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Global alignment and alignment extension☆135Updated 2 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- Ultra-fast de novo assembler using long noisy reads☆134Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated 11 months ago
- SV caller for nanopore data☆92Updated 5 years ago
- ☆131Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Long-read mock community experiments☆105Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- Long read aligner☆115Updated 2 years ago
- Graph realignment tools for structural variants☆162Updated 2 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆110Updated 6 months ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆40Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆109Updated 5 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago