mkirsche / IrisLinks
A module for improving the insertion sequences of structural variant calls
☆31Updated 4 years ago
Alternatives and similar repositories for Iris
Users that are interested in Iris are comparing it to the libraries listed below
Sorting:
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆31Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- SV calling for diploid assemblies☆28Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆37Updated last year
- ☆18Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated last month
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- SV genotyper for long reads with a variation graph☆12Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆42Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Convert HAL to VG☆22Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago