Alternatives and similar repositories for Iris

Users that are interested in Iris are comparing it to the libraries listed below

• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 10 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated 10 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 5 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆15Updated 11 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆29Updated last month
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆20Updated 9 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last month
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 5 months ago
• mrvollger / NucFreq
  ☆36Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• hitbc / gcSV
  ☆20Updated 2 months ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• farhangus / Sniffles2_plot
  ☆30Updated 8 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year