mkirsche / Iris
A module for improving the insertion sequences of structural variant calls
☆30Updated 3 years ago
Alternatives and similar repositories for Iris:
Users that are interested in Iris are comparing it to the libraries listed below
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- SV calling for diploid assemblies☆26Updated 11 months ago
- ☆30Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆14Updated 8 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Variant annotation and merging pipeline☆31Updated last month
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆42Updated 9 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆35Updated 11 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 2 weeks ago
- ☆29Updated 6 months ago
- SV genotyping with long reads☆40Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Draw a dot plot from a paf alignment☆25Updated 2 months ago
- ☆14Updated 10 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago