baoxingsong / AnchorWaveLinks
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
☆172Updated last month
Alternatives and similar repositories for AnchorWave
Users that are interested in AnchorWave are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- Nanopore data assembler☆157Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆97Updated 4 months ago
- haplotypic duplication identification tool☆247Updated last year
- Yet another Hi-C scaffolding tool☆153Updated 7 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆134Updated 3 months ago
- High-precision TE Annotator☆119Updated 2 weeks ago
- Any Way to Show Multi genomic Synteny☆194Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆215Updated 9 months ago
- Yet another k-mer analyzer☆139Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆139Updated 5 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆153Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆205Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆134Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- Constructing a pangenome gene graph☆191Updated 3 weeks ago
- tomato graph pangenome☆83Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- ☆149Updated last month
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆146Updated 5 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆174Updated 6 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Comparison of multiple long read datasets☆134Updated last month
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆81Updated 5 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- PASA software☆188Updated 4 months ago