Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
☆203Aug 17, 2026Updated 2 months ago
Alternatives and similar repositories for AnchorWave
Users that are interested in AnchorWave are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆212Nov 23, 2025Updated 11 months ago
- Neural network classification of TE☆104Apr 3, 2026Updated 7 months ago
- haplotypic duplication identification tool☆299Oct 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆176Nov 4, 2025Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆278Updated this week
- Yet another Hi-C scaffolding tool☆186Nov 4, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆252Sep 6, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- ☆271Jan 24, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆716Updated this week
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆935Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆177Sep 15, 2026Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 11 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆194Jul 21, 2026Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- source code for EVM☆130Sep 22, 2026Updated last month
- Any Way to Show Multi genomic Synteny☆233Oct 14, 2026Updated 3 weeks ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Constructing a pangenome gene graph☆213Aug 11, 2025Updated last year
- Jasmine: SV Merging Across Samples☆266Dec 20, 2024Updated last year
- High-precision TE Annotator☆168Dec 4, 2025Updated 11 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆118Jul 27, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆97Jan 14, 2025Updated last year
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆192Jun 23, 2026Updated 4 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 5 months ago
- ☆205Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆106Apr 7, 2026Updated 6 months ago