Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
☆202Aug 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for AnchorWave
Users that are interested in AnchorWave are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆223Aug 27, 2026Updated last week
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 9 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆261Jan 24, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated 2 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆172Nov 4, 2025Updated 10 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆175Nov 24, 2025Updated 9 months ago
- Neural network classification of TE☆102Apr 3, 2026Updated 5 months ago
- source code for EVM☆128Nov 29, 2024Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆271Updated this week
- Extensive de-novo TE Annotator☆470Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 3 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆246Sep 6, 2024Updated last year
- conserved non-coding sequence☆18Feb 21, 2022Updated 4 years ago
- High-precision TE Annotator☆164Dec 4, 2025Updated 9 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆279Aug 10, 2026Updated 3 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆113Nov 17, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆809May 31, 2026Updated 3 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆123Jul 22, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆354Jul 27, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆95Jan 14, 2025Updated last year
- ☆198Feb 10, 2026Updated 6 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆187Jul 21, 2026Updated last month
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year