baoxingsong / AnchorWaveLinks
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
☆179Updated last month
Alternatives and similar repositories for AnchorWave
Users that are interested in AnchorWave are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- Version 5 of the CAFE phylogenetics software☆151Updated 9 months ago
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Yet another Hi-C scaffolding tool☆163Updated last year
- Nanopore data assembler☆162Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆157Updated 3 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆151Updated 2 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated this week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆221Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Fast and accurately polish the genome generated by long reads.☆236Updated 10 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆242Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- Yet another k-mer analyzer☆151Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆149Updated 4 months ago
- ☆222Updated 9 months ago
- Reference-free profiling of polyploid genomes☆131Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆110Updated 4 months ago
- source code for EVM☆118Updated 11 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆180Updated 11 months ago
- High-precision TE Annotator☆137Updated 3 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆139Updated 4 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 3 years ago
- haplotypic duplication identification tool☆268Updated 3 weeks ago