Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
☆191Oct 15, 2025Updated 6 months ago
Alternatives and similar repositories for AnchorWave
Users that are interested in AnchorWave are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- Synteny and Rearrangement Identifier☆463Mar 17, 2026Updated last month
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆239Sep 18, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆238Jan 24, 2025Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆163Nov 4, 2025Updated 6 months ago
- Neural network classification of TE☆99Apr 3, 2026Updated last month
- source code for EVM☆124Nov 29, 2024Updated last year
- Extensive de-novo TE Annotator☆443Apr 5, 2026Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆101Apr 7, 2026Updated last month
- High-precision TE Annotator☆155Dec 4, 2025Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆237Sep 6, 2024Updated last year
- conserved non-coding sequence☆17Feb 21, 2022Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 3 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Apr 13, 2026Updated 3 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 5 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Yet another Hi-C scaffolding tool☆180Nov 4, 2024Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆267Jan 5, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An accurate GFF3/GTF lift over pipeline☆535Aug 1, 2023Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆163Nov 24, 2025Updated 5 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆768Apr 15, 2026Updated 3 weeks ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 9 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- ☆189Feb 10, 2026Updated 2 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆92Jan 14, 2025Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆346Apr 7, 2025Updated last year
- haplotypic duplication identification tool☆284Oct 30, 2025Updated 6 months ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆903Updated this week
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆675Updated this week