Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
☆83Jan 20, 2026Updated 3 months ago
Alternatives and similar repositories for HiPhase
Users that are interested in HiPhase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioinformatics toolkit in rust☆105Feb 15, 2026Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 5 months ago
- HiFi-based caller for highly similar paralogous genes☆68Mar 3, 2026Updated 2 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆49Oct 22, 2024Updated last year
- ☆18Jan 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tandem repeat genotyping and visualization from PacBio HiFi data☆136Dec 8, 2025Updated 4 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆75Nov 4, 2025Updated 6 months ago
- A complete diploid human genome☆146Mar 27, 2026Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Collection of tools for the analysis of CpG data☆111Jul 9, 2025Updated 9 months ago
- ☆27Nov 14, 2025Updated 5 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆90Apr 16, 2026Updated 2 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- ☆32Feb 14, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆41Oct 6, 2025Updated 6 months ago
- A battery of methylation tools for PacBio HiFi reads☆51Dec 2, 2025Updated 5 months ago
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Yet another k-mer analyzer☆169Dec 30, 2025Updated 4 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- Tumor-normal variant calling workflow using HiFi reads☆29Mar 4, 2026Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆250Apr 13, 2026Updated 3 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆129Mar 20, 2026Updated last month
- ☆23May 21, 2025Updated 11 months ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last week
- Evaluating genome assemblies☆120Mar 3, 2026Updated 2 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆189Feb 10, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 7 months ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆105Apr 22, 2025Updated last year