PacificBiosciences / HiPhaseLinks
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
☆73Updated 2 months ago
Alternatives and similar repositories for HiPhase
Users that are interested in HiPhase are comparing it to the libraries listed below
Sorting:
- Joint structural variant and copy number variant caller for HiFi sequencing data☆52Updated 2 weeks ago
- Evaluating genome assemblies☆95Updated last week
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- A program for assessing the T2T genome continuity☆75Updated last month
- WDL workflows for variant calling and assembly using ONT☆34Updated 2 weeks ago
- ☆28Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Simple pileup-based variant caller☆90Updated last month
- Phased assembly variant caller☆116Updated 6 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- PacBio BAM toolkit☆43Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- ☆40Updated 3 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆50Updated last month
- ☆48Updated 9 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Variant calling tool for long-read sequencing data☆110Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- SRF: Satellite Repeat Finder☆96Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Application of pan-genome for population☆105Updated 7 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Tools for the analysis of structural variation in genomes☆79Updated last year