Alternatives and similar repositories for pbsv

Users that are interested in pbsv are comparing it to the libraries listed below

• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆236Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 3 months ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆181Updated 4 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆131Updated last month
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month
• epi2me-labs / wf-human-variation
  ☆148Updated last month
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆208Updated 2 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆153Updated last month
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆167Updated 2 years ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆165Updated 3 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆103Updated 6 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆226Updated 11 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆147Updated last year
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆246Updated last month
• marbl / HG002
  A complete diploid human genome
  ☆140Updated 3 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 5 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆146Updated 6 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆203Updated 5 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆227Updated this week
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆158Updated 3 weeks ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 8 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated 2 years ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆168Updated 9 months ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆174Updated last month
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆136Updated 4 years ago
• parklab / bamsnap
  ☆122Updated 5 months ago