Alternatives and similar repositories for pbsv

Users that are interested in pbsv are comparing it to the libraries listed below

• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆219Updated 7 months ago
• epi2me-labs / wf-human-variation
  ☆131Updated last week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆141Updated last week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆159Updated last week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆155Updated 2 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆122Updated last week
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆201Updated 5 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆135Updated last week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆221Updated 5 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 2 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆141Updated 2 weeks ago
• epi2me-labs / wf-transcriptomes
  ☆99Updated this week
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆159Updated 2 years ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆207Updated this week
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆170Updated 7 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆132Updated 11 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆142Updated 3 weeks ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆194Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆155Updated last month
• marbl / HG002
  A complete diploid human genome
  ☆123Updated last week
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆233Updated 11 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆185Updated 2 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 4 years ago