Alternatives and similar repositories for pbsv:

Users that are interested in pbsv are comparing it to the libraries listed below

• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆203Updated 2 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated 2 weeks ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆122Updated this week
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆183Updated 9 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆115Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆135Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆77Updated 2 weeks ago
• epi2me-labs / wf-human-variation
  ☆110Updated this week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated 2 months ago
• epi2me-labs / wf-transcriptomes
  ☆86Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆141Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• wdecoster / chopper
  ☆171Updated last week
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆181Updated 2 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 8 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆181Updated 7 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆109Updated 2 months ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆146Updated this week
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆140Updated last month
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆93Updated 2 weeks ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 5 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆119Updated 6 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 2 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆157Updated last year