pbsv - PacBio structural variant (SV) calling and analysis tools
☆167Feb 26, 2025Updated last year
Alternatives and similar repositories for pbsv
Users that are interested in pbsv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Variant Identification Method using Long Reads☆183Jun 29, 2021Updated 5 years ago
- Long read based human genomic structural variation detection with cuteSV☆290Updated this week
- Structural variation caller using third generation sequencing☆666Jun 24, 2026Updated 2 weeks ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- A minimap2 frontend for PacBio native data formats☆219Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆254Dec 20, 2024Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆86May 27, 2026Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆49Oct 22, 2024Updated last year
- Structural variant toolkit for VCFs☆418May 22, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆293Feb 4, 2025Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆139Jun 10, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆420Updated this week
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- Long read / genome alignment software☆328Dec 16, 2025Updated 6 months ago
- Structural Variant Identification Method using Genome Assemblies☆144Sep 16, 2022Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated 11 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month
- ☆85Mar 3, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Structural variant caller for real-time long-read sequencing data☆62Dec 1, 2022Updated 3 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Collection of tools for the analysis of CpG data☆112Jul 9, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- Annotation and Ranking of Structural Variation☆301Jun 19, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆474Jul 1, 2026Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆239Jun 24, 2026Updated 2 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆157Jun 26, 2026Updated last week
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆378Jun 25, 2026Updated 2 weeks ago
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month