PacificBiosciences / pbsvLinks
pbsv - PacBio structural variant (SV) calling and analysis tools
☆159Updated 9 months ago
Alternatives and similar repositories for pbsv
Users that are interested in pbsv are comparing it to the libraries listed below
Sorting:
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- A tool for somatic structural variant calling using long reads☆155Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆164Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated 3 weeks ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆211Updated this week
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Graph realignment tools for structural variants☆164Updated 2 years ago
- Tools for plotting methylation data in various ways☆165Updated 2 weeks ago
- ☆142Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆224Updated 9 months ago
- Pangenome-based genome inference☆149Updated 3 weeks ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- A minimap2 frontend for PacBio native data formats☆207Updated 3 weeks ago
- Collection of tools for the analysis of CpG data☆99Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆134Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- Hierarchical Alignment Format☆173Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- A complete diploid human genome☆137Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated last week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Phased assembly variant caller☆129Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 6 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 4 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year