ChaissonLab / LRA
Long read aligner
☆115Updated last year
Alternatives and similar repositories for LRA:
Users that are interested in LRA are comparing it to the libraries listed below
- ☆110Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆108Updated 2 years ago
- Comparison of multiple long read datasets☆125Updated 2 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆98Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆145Updated 2 weeks ago
- Plotting tools for nanopore methylation data☆93Updated 10 months ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Phased assembly variant caller☆112Updated 4 months ago
- Yet another k-mer analyzer☆133Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆122Updated 6 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆82Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆133Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆105Updated 10 months ago
- Nanopore data assembler☆149Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- Jasmine: SV Merging Across Samples☆210Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- A tool for somatic structural variant calling using long reads☆126Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆101Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 weeks ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated this week
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 5 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Variant calling tool for long-read sequencing data☆107Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆142Updated last month