ChaissonLab / LRA

Related projects ⓘ

Alternatives and complementary repositories for LRA

• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆136Updated 2 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆97Updated last month
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆117Updated 2 weeks ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆105Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 10 months ago
• twolinin / longphase
  ☆102Updated 2 months ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆90Updated 6 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆64Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆99Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆128Updated last week
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆77Updated 7 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆100Updated 5 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆71Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 5 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆209Updated 11 months ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆95Updated 3 weeks ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆130Updated 3 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆93Updated 2 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆97Updated 3 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆105Updated 2 weeks ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆148Updated 11 months ago
• sheinasim / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆81Updated 4 months ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆50Updated this week
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆181Updated 2 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆98Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆92Updated 6 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆177Updated this week
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆92Updated 2 weeks ago