Alternatives and similar repositories for LRA:

Users that are interested in LRA are comparing it to the libraries listed below

• twolinin / longphase
  ☆110Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 7 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆113Updated 2 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆102Updated this week
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆93Updated 11 months ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆128Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆211Updated 4 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 5 months ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆82Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆151Updated 3 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated last month
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated 3 weeks ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆162Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆136Updated 2 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆87Updated 9 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆149Updated last month
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆105Updated 3 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆108Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆145Updated 2 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated 3 weeks ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆128Updated last week
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆107Updated 10 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆91Updated this week
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆156Updated 2 years ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆217Updated 3 months ago