vibansal / HapCUT2Links
software tools for haplotype assembly from sequence data
☆226Updated last year
Alternatives and similar repositories for HapCUT2
Users that are interested in HapCUT2 are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆162Updated 11 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Updated 4 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆175Updated 2 years ago
- Jasmine: SV Merging Across Samples☆240Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Structural variation and indel detection by local assembly☆251Updated 4 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- Graph realignment tools for structural variants☆165Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆210Updated 2 weeks ago
- ☆151Updated 3 weeks ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- Structural Variant Identification Method using Long Reads☆181Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Updated last month
- Long read based human genomic structural variation detection with cuteSV☆278Updated 4 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆263Updated last year
- Annotation and Ranking of Structural Variation☆286Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆84Updated 3 years ago
- A tool for somatic structural variant calling using long reads☆160Updated 3 months ago
- Tools for plotting methylation data in various ways☆170Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- Long read / genome alignment software☆311Updated last month
- Ultra-fast de novo assembler using long noisy reads☆136Updated 4 years ago
- PASA software☆197Updated last year