vibansal / HapCUT2
software tools for haplotype assembly from sequence data
☆206Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for HapCUT2
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Annotation and Ranking of Structural Variation☆217Updated 2 months ago
- A minimap2 frontend for PacBio native data formats☆176Updated last week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- PASA software☆174Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆146Updated 11 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆129Updated last week
- Comparison of multiple long read datasets☆103Updated this week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Tools for processing and analyzing structural variants.☆149Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆93Updated last month
- Structural variation and indel detection by local assembly☆233Updated 5 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆162Updated 4 months ago
- ☆74Updated this week
- Long read aligner☆112Updated last year
- De-Novo Repeat Discovery Tool☆194Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 5 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆213Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆151Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆80Updated 2 years ago
- Nanopore data assembler☆135Updated 2 years ago
- Graph realignment tools for structural variants☆150Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆200Updated last year
- An overview of all nanopack tools☆210Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆90Updated 3 weeks ago
- Filtering and trimming of long read sequencing data☆189Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆117Updated 7 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆234Updated 4 months ago