vibansal / HapCUT2Links
software tools for haplotype assembly from sequence data
☆223Updated 9 months ago
Alternatives and similar repositories for HapCUT2
Users that are interested in HapCUT2 are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Jasmine: SV Merging Across Samples☆230Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆162Updated 2 years ago
- Graph realignment tools for structural variants☆164Updated 2 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆125Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆178Updated 4 years ago
- Long read based human genomic structural variation detection with cuteSV☆274Updated last month
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- ☆139Updated 3 weeks ago
- A minimap2 frontend for PacBio native data formats☆205Updated this week
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- A tool for estimating repeat sizes☆198Updated last year
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆259Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆239Updated last year
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- diploid SNV caller for error-prone reads☆204Updated last year
- Annotation and Ranking of Structural Variation☆267Updated last month
- A tool for somatic structural variant calling using long reads☆150Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 5 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆209Updated last week
- Tools for plotting methylation data in various ways☆164Updated this week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year