MethPhaser: methylation-based haplotype phasing of human genomes
☆55Mar 5, 2025Updated last year
Alternatives and similar repositories for methphaser
Users that are interested in methphaser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 8 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆86May 27, 2026Updated 2 weeks ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 5 years ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆19May 26, 2026Updated 2 weeks ago
- ☆20Nov 17, 2025Updated 6 months ago
- ☆27Nov 14, 2025Updated 6 months ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 3 months ago
- ☆191Feb 10, 2026Updated 4 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆160Mar 25, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- Tandem repeat genotyping from long reads☆25Jun 2, 2026Updated last week
- base-level dotplots from PAF alignments☆34Sep 18, 2025Updated 8 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆368May 28, 2026Updated 2 weeks ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated 3 weeks ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆61Aug 2, 2022Updated 3 years ago
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 2 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆116Apr 9, 2025Updated last year
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated 2 weeks ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- ☆129May 4, 2026Updated last month
- ☆85Mar 3, 2025Updated last year
- A tool for somatic structural variant calling using long reads☆172Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A complete diploid human genome☆152May 27, 2026Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- SRF: Satellite Repeat Finder☆104Jan 8, 2024Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated last month
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 3 months ago
- A bioinformatics tool for working with modified bases☆267Updated this week