treangenlab / methphaser
MethPhaser: methylation-based haplotype phasing of human genomes
☆48Updated 2 months ago
Alternatives and similar repositories for methphaser
Users that are interested in methphaser are comparing it to the libraries listed below
Sorting:
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A tutorial on structural variant calling for short read sequencing data☆32Updated 6 months ago
- Variant annotation and merging pipeline☆34Updated last month
- Long-read splice alignment with high accuracy☆63Updated 7 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated 2 weeks ago
- Immuological gene typing and annotation for genome assembly☆35Updated 2 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆51Updated this week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆79Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural variant merging tool☆49Updated 8 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated last month
- ☆29Updated 4 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated last week
- ☆27Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 weeks ago
- python plotly Circos from VCF☆35Updated 10 months ago