treangenlab / methphaserLinks
MethPhaser: methylation-based haplotype phasing of human genomes
☆52Updated 9 months ago
Alternatives and similar repositories for methphaser
Users that are interested in methphaser are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- ☆83Updated 9 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 3 weeks ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated last month
- Error correction of ONT transcript reads☆58Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- Tumor-normal variant calling workflow using HiFi reads☆24Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 8 months ago
- A battery of methylation tools for PacBio HiFi reads☆44Updated 3 weeks ago
- ☆50Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- ☆32Updated last year
- Structural variant caller☆55Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 3 months ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆78Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year