treangenlab / methphaser
MethPhaser: methylation-based haplotype phasing of human genomes
☆42Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for methphaser
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆30Updated 2 weeks ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆30Updated 3 weeks ago
- ☆26Updated 3 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- ☆32Updated 8 months ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- ☆31Updated 4 years ago
- Working space for the GIAB TR benchmarking project☆20Updated 3 weeks ago
- Structural variant caller☆54Updated 2 years ago
- SV calling for diploid assemblies☆23Updated 7 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- SV genotyping with long reads☆40Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago