☆10Mar 4, 2025Updated last year
Alternatives and similar repositories for SaaRclust
Users that are interested in SaaRclust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- ☆62Sep 15, 2025Updated 8 months ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- ☆24Feb 22, 2023Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated last month
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated 2 years ago
- VNTR annotation using motif selection☆42Updated this week
- ☆10Jan 18, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- alignment to variation graph inducer☆159Apr 11, 2026Updated last month
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- WDL’s and Dockerfiles for assembly QC process☆72Apr 28, 2026Updated 3 weeks ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- ☆128May 4, 2026Updated 2 weeks ago
- ☆41Oct 6, 2025Updated 7 months ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago