EichlerLab / pavLinks
Phased assembly variant caller
☆119Updated 6 months ago
Alternatives and similar repositories for pav
Users that are interested in pav are comparing it to the libraries listed below
Sorting:
- Pangenome-based genome inference☆129Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆114Updated this week
- ☆112Updated last month
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- Structural Variant Identification Method using Genome Assemblies☆118Updated 2 years ago
- Evaluating genome assemblies☆97Updated this week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆134Updated last month
- Application of pan-genome for population☆106Updated 8 months ago
- Constructing a pangenome gene graph☆190Updated 3 weeks ago
- High-precision TE Annotator☆119Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- accurate LiftOver tool for new genome assemblies☆129Updated 10 months ago
- tomato graph pangenome☆83Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Jasmine: SV Merging Across Samples☆216Updated 6 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated 11 months ago
- Research release basecalling models and configurations☆113Updated last month
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- ☆57Updated 4 years ago
- A list of software for pangenomics☆117Updated last month
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Dfam Transposable Element Tools Docker container.☆93Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- A program for assessing the T2T genome continuity☆79Updated last week