EichlerLab / pavLinks
Phased assembly variant caller
☆116Updated 6 months ago
Alternatives and similar repositories for pav
Users that are interested in pav are comparing it to the libraries listed below
Sorting:
- Pangenome-based genome inference☆127Updated last month
- Tandem repeat genotyping and visualization from PacBio HiFi data☆117Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Collection of tools for the analysis of CpG data☆82Updated 4 months ago
- Evaluating genome assemblies☆95Updated last week
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆117Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- ☆112Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆114Updated last week
- Mapping pipeline for data generated using Arima-HiC☆77Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- A list of software for pangenomics☆114Updated 3 weeks ago
- Application of pan-genome for population☆105Updated 7 months ago
- Constructing a pangenome gene graph☆188Updated this week
- Simple pileup-based variant caller☆90Updated last month
- High-precision TE Annotator☆119Updated last week
- tomato graph pangenome☆82Updated 2 years ago
- Research release basecalling models and configurations☆110Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆91Updated 10 months ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆137Updated 3 months ago
- accurate LiftOver tool for new genome assemblies☆126Updated 9 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆128Updated 7 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- ☆48Updated 9 months ago