Phased assembly variant caller
☆147Dec 4, 2024Updated last year
Alternatives and similar repositories for pav
Users that are interested in pav are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Variant Identification Method using Genome Assemblies☆148Sep 16, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Evaluating genome assemblies☆128Oct 21, 2026Updated last week
- Variant annotation and merging pipeline☆44Jul 22, 2025Updated last year
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated 3 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆175Sep 15, 2026Updated last month
- Pangenome-based genome inference☆184Updated this week
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- ☆43Oct 6, 2025Updated last year
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆45Dec 29, 2025Updated 10 months ago
- ☆41Feb 22, 2023Updated 3 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆118Apr 9, 2025Updated last year
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆433Oct 9, 2026Updated 2 weeks ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆169Jul 15, 2026Updated 3 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- VNTR annotation using motif selection☆44Updated this week
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 4 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 2 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆120Aug 21, 2026Updated 2 months ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Sequence-to-graph mapper and graph generator☆492Aug 11, 2025Updated last year
- A complete diploid human genome☆162Oct 19, 2026Updated last week
- ☆44Jan 14, 2026Updated 9 months ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆145Jun 10, 2026Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆359Jul 27, 2026Updated 3 months ago