EichlerLab / pavLinks
Phased assembly variant caller
☆126Updated 10 months ago
Alternatives and similar repositories for pav
Users that are interested in pav are comparing it to the libraries listed below
Sorting:
- Pangenome-based genome inference☆147Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- Collection of tools for the analysis of CpG data☆95Updated 3 months ago
- ☆117Updated last month
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆109Updated 2 weeks ago
- accurate LiftOver tool for new genome assemblies☆135Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- Fast and accurate coordinate conversion between assemblies☆116Updated 2 weeks ago
- Yet another k-mer analyzer☆143Updated last year
- Application of pan-genome for population☆110Updated 11 months ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Evaluating genome assemblies☆105Updated 3 weeks ago
- Structural Variant Identification Method using Long Reads☆175Updated 4 years ago
- ☆141Updated 5 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- ☆49Updated last week
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Constructing a pangenome gene graph☆195Updated last month
- Make colorful identity heatmaps of genomic sequence☆122Updated last year
- SRF: Satellite Repeat Finder☆97Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆83Updated 5 months ago
- A complete diploid human genome☆134Updated last week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago