Alternatives and similar repositories for pav:

Users that are interested in pav are comparing it to the libraries listed below

• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated 2 weeks ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆98Updated last month
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated last week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated last month
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆99Updated last week
• twolinin / longphase
  ☆109Updated 3 weeks ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆88Updated 2 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆107Updated 2 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆107Updated 3 weeks ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆117Updated 2 weeks ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆86Updated 8 months ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆105Updated 3 weeks ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆103Updated 5 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆184Updated 8 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆124Updated 5 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆76Updated 10 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆81Updated 2 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆142Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 9 months ago
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆57Updated 3 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 6 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆87Updated last month
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆62Updated 2 weeks ago