Alternatives and similar repositories for pav

Users that are interested in pav are comparing it to the libraries listed below

• eblerjana / pangenie
  Pangenome-based genome inference
  ☆146Updated last month
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆124Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆93Updated 2 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 5 months ago
• twolinin / longphase
  ☆116Updated 2 weeks ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆109Updated 11 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆123Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆128Updated 2 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 7 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆143Updated last year
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• mobinasri / flagger
  Evaluating genome assemblies
  ☆105Updated last week
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆110Updated last month
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆119Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last week
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated last week
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆81Updated 4 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆145Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆67Updated 5 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆83Updated 4 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 4 months ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆57Updated 2 years ago
• daewoooo / SVbyEye
  ☆138Updated 4 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆194Updated last month
• epi2me-labs / modbam2bed
  ☆49Updated last year
• davidebolo1993 / VISOR
  VarIant SimulatOR for short, long and linked reads
  ☆48Updated 10 months ago