Alternatives and similar repositories for pav

Users that are interested in pav are comparing it to the libraries listed below

• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated 3 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆99Updated 5 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• twolinin / longphase
  ☆119Updated 3 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆128Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆162Updated this week
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆104Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆108Updated 10 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆113Updated 2 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• lh3 / yak
  Yet another k-mer analyzer
  ☆152Updated last week
• starskyzheng / panpop
  Application of pan-genome for population
  ☆115Updated last month
• mobinasri / flagger
  Evaluating genome assemblies
  ☆109Updated 2 months ago
• daewoooo / SVbyEye
  ☆143Updated last month
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆179Updated 4 years ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆125Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆94Updated 7 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆115Updated 3 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆137Updated last year
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆97Updated last year
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆60Updated 3 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 3 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 8 months ago