Phased assembly variant caller
☆141Dec 4, 2024Updated last year
Alternatives and similar repositories for pav
Users that are interested in pav are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 11 months ago
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- Structural variant toolkit for VCFs☆417May 22, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆116Apr 9, 2025Updated last year
- Jasmine: SV Merging Across Samples☆255Dec 20, 2024Updated last year
- ☆40Jan 14, 2026Updated 5 months ago
- Pangenome-based genome inference☆174Jun 15, 2026Updated 2 weeks ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- ☆42Oct 6, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆44Dec 29, 2025Updated 6 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆156Jun 16, 2026Updated 2 weeks ago
- A complete diploid human genome☆152Jun 23, 2026Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆162Mar 25, 2026Updated 3 months ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- VNTR annotation using motif selection☆42May 25, 2026Updated last month
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 3 years ago
- ☆101Apr 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆398Apr 22, 2026Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆115Jun 15, 2026Updated 2 weeks ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- k-mer based assembly evaluation☆344May 21, 2026Updated last month
- Toolset for SV simulation, comparison and filtering☆422Dec 1, 2023Updated 2 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆418Dec 31, 2025Updated 6 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Long read / genome alignment software☆325Dec 16, 2025Updated 6 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated last week
- ☆39Feb 22, 2023Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆167Feb 26, 2025Updated last year
- ☆129Updated this week