Phased assembly variant caller
☆135Dec 4, 2024Updated last year
Alternatives and similar repositories for pav
Users that are interested in pav are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 7 months ago
- Structural Variant Identification Method using Genome Assemblies☆138Sep 16, 2022Updated 3 years ago
- Structural variant toolkit for VCFs☆399Mar 8, 2026Updated last week
- Evaluating genome assemblies☆118Mar 3, 2026Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆107Jun 6, 2021Updated 4 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated 11 months ago
- Jasmine: SV Merging Across Samples☆243Dec 20, 2024Updated last year
- ☆38Jan 14, 2026Updated 2 months ago
- Pangenome-based genome inference☆162Dec 1, 2025Updated 3 months ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- ☆38Oct 6, 2025Updated 5 months ago
- ☆38Dec 29, 2025Updated 2 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆148Jul 7, 2025Updated 8 months ago
- A complete diploid human genome☆145Mar 9, 2026Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆147Nov 24, 2025Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated 11 months ago
- VNTR annotation using motif selection☆40Mar 14, 2026Updated last week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- ☆102Apr 22, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 2 weeks ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆409Dec 31, 2025Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 weeks ago
- Yet another k-mer analyzer☆162Dec 30, 2025Updated 2 months ago
- Long read / genome alignment software☆310Dec 16, 2025Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- ☆39Feb 22, 2023Updated 3 years ago
- ☆125Feb 22, 2026Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆164Feb 26, 2025Updated last year