EichlerLab / pav
Phased assembly variant caller
☆107Updated last month
Alternatives and similar repositories for pav:
Users that are interested in pav are comparing it to the libraries listed below
- Tandem repeat expansion detection or genotyping from long-read alignments☆89Updated last month
- Somatic structural variant caller for long-read data☆53Updated this week
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- A tool for somatic structural variant calling using long reads☆108Updated this week
- Pangenome-based genome inference☆121Updated this week
- Structural Variant Identification Method using Genome Assemblies☆99Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆97Updated 3 years ago
- Evaluating genome assemblies☆78Updated 3 weeks ago
- Collection of tools for the analysis of CpG data☆75Updated 10 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆84Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆94Updated 7 months ago
- ☆107Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last month
- Mapping pipeline for data generated using Arima-HiC☆71Updated 7 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 3 months ago
- High-precision TE Annotator☆88Updated this week
- Evaluation and polishing workflows for T2T genome assemblies☆115Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆78Updated 9 months ago
- Dfam Transposable Element Tools Docker container.☆87Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆91Updated this week
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- PGR-TK: Pangenome Research Tool Kit☆96Updated 8 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- Application of pan-genome for population☆100Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆131Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆79Updated this week
- tomato graph pangenome☆76Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆124Updated 2 months ago