shilpagarg / DipAsm
☆76Updated 4 years ago
Alternatives and similar repositories for DipAsm:
Users that are interested in DipAsm are comparing it to the libraries listed below
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆76Updated 3 weeks ago
- TGS scaffolding☆46Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆34Updated 2 years ago
- ☆43Updated 8 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Predict 5mC in PacBio HiFi reads☆1Updated last month
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- ☆29Updated 2 months ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 3 months ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- A program for assessing the T2T genome continuity☆69Updated 2 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 3 months ago
- A program to call variants from genome alignment☆79Updated last year
- Pipeline to convert a haploid assembly into diploid☆100Updated last month
- finshingTool☆55Updated 8 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆48Updated 8 months ago