Alternatives and similar repositories for DipAsm

Users that are interested in DipAsm are comparing it to the libraries listed below

• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆10Updated 6 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆49Updated 3 weeks ago
• kjenike / panagram
  ☆63Updated 2 weeks ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated 11 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 3 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 8 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated last week
• maickrau / ribotin
  ☆36Updated 2 weeks ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆97Updated last year
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆83Updated last month
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆52Updated 2 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆101Updated 4 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆33Updated 10 months ago
• MeHelmy / princess
  ☆81Updated 5 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 2 weeks ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆57Updated last year