shilpagarg / DipAsmLinks
☆79Updated 5 years ago
Alternatives and similar repositories for DipAsm
Users that are interested in DipAsm are comparing it to the libraries listed below
Sorting:
- Call select base modifications in PacBio HiFi reads☆14Updated 8 months ago
- TGS scaffolding☆47Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆53Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- ☆31Updated 9 months ago
- ☆81Updated 7 months ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- ☆49Updated last year
- ☆66Updated last month
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆64Updated 3 months ago
- finshingTool☆54Updated 8 years ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- ☆44Updated 8 years ago
- A program for assessing the T2T genome continuity☆88Updated 3 weeks ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- SRF: Satellite Repeat Finder☆98Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆63Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago