laminlabs / bionty
Registries for biological entities, coupled to public ontologies.
☆13Updated this week
Alternatives and similar repositories for bionty:
Users that are interested in bionty are comparing it to the libraries listed below
- a dataloader to work with large single cell datasets from lamindb☆23Updated 2 weeks ago
- Shadow objects for AnnData and MuData (experimental)☆12Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated last week
- Access public biological ontologies.☆16Updated 8 months ago
- Automatically annotate cell types, consistently across samples.☆10Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated this week
- Slides and Notebooks for scverse 2024☆17Updated 6 months ago
- A fast dataloader for bigwig files made for machine learning☆27Updated 6 months ago
- Multimodal Data (.h5mu) implementation for Python☆92Updated 3 weeks ago
- Build contrasts for models defined with formulaic☆12Updated last week
- Fit generalized linear models in python.☆27Updated 2 years ago
- Distributed single-cell data analysis.☆30Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 4 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 2 weeks ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- Code and documentation for the curation of cellxgene datasets☆43Updated this week
- ☆21Updated 4 years ago
- Flow & mass cytometry analytics.☆48Updated last week
- ☆51Updated 2 weeks ago
- ☆16Updated 9 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆24Updated 3 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆74Updated 2 weeks ago
- Multi-omics factor analysis v2☆44Updated 5 months ago
- ☆21Updated 2 years ago
- ☆30Updated last week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 5 months ago
- A python package for chromVAR☆27Updated last year
- Unified knowledge-driven network inference from omics data☆33Updated last month