laminlabs / biontyLinks
Access & manage biological ontologies.
☆20Updated last week
Alternatives and similar repositories for bionty
Users that are interested in bionty are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆32Updated last week
- Shadow objects for AnnData and MuData (experimental)☆11Updated 9 months ago
- Slides and Notebooks for scverse 2024☆17Updated last year
- Multimodal Data (.h5mu) implementation for Python☆104Updated 2 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Flow & mass cytometry analytics.☆58Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Distributed single-cell data analysis.☆35Updated 2 weeks ago
- Registry for scverse ecosystem packages☆31Updated this week
- Build contrasts for models defined with formulaic☆13Updated last week
- CZ CELLxGENE Discover Census☆114Updated this week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆81Updated last week
- Single-cell multi-omics integration using Optimal Transport☆48Updated 4 months ago
- Multi-modal single cell analysis pipelines☆61Updated 2 weeks ago
- ☆59Updated 7 months ago
- ☆61Updated last year
- Automatically annotate cell types, consistently across samples.☆17Updated last week
- ☆15Updated last month
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆92Updated 3 weeks ago
- ☆22Updated 5 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 5 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- Access public biological ontologies.☆15Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆13Updated last year
- Create PyTorch Datasets from AnnData☆21Updated 9 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆58Updated this week
- Use cases for anndata.☆14Updated 6 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 5 months ago