Alternatives and similar repositories for bionty

Users that are interested in bionty are comparing it to the libraries listed below

• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 10 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆105Updated last month
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆32Updated 3 weeks ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆58Updated 3 weeks ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated this week
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated last month
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated 3 weeks ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated 3 weeks ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆114Updated last week
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆32Updated 2 weeks ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆82Updated last week
• theislab / geome
  ☆15Updated last month
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 5 months ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆42Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• theislab / scTab
  ☆62Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated last month
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆27Updated last year
• theislab / multimil
  Weakly supervised learning uncovers phenotypic signatures in single-cell data
  ☆38Updated 3 weeks ago
• theislab / interactive_plotting
  ☆22Updated last week
• laminlabs / bionty-base
  Access public biological ontologies.
  ☆15Updated last year
• bioFAM / mofaflex
  factor models for omics data
  ☆30Updated this week
• NygenAnalytics / CyteType
  Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
  ☆94Updated last month
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆65Updated 6 months ago
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆13Updated last year
• lilab-bcb / harmony-pytorch
  ☆61Updated 7 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 6 months ago