laminlabs / biontyLinks
Registries for biological entities, coupled to public ontologies.
☆16Updated this week
Alternatives and similar repositories for bionty
Users that are interested in bionty are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆26Updated last week
- Shadow objects for AnnData and MuData (experimental)☆12Updated 3 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated 3 weeks ago
- Slides and Notebooks for scverse 2024☆17Updated 9 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆13Updated 2 weeks ago
- A fast dataloader for bigwig files made for machine learning☆28Updated last month
- Automatically annotate cell types, consistently across samples.☆13Updated 2 months ago
- Agentic Cell type annotation for Anndata objects☆24Updated last week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆24Updated this week
- Fit generalized linear models in python.☆27Updated 2 years ago
- Flow & mass cytometry analytics.☆52Updated 2 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- Access public biological ontologies.☆16Updated 10 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated last month
- Multi-modal single cell analysis pipelines☆59Updated 2 months ago
- ☆54Updated last month
- Multi-omics factor analysis v2☆45Updated 8 months ago
- Distributed single-cell data analysis.☆31Updated this week
- Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).☆27Updated last year
- Code and documentation for the curation of cellxgene datasets☆46Updated this week
- ☆16Updated 11 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 10 months ago
- Single-cell multi-omics integration using Optimal Transport☆45Updated 9 months ago
- ☆43Updated 7 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆35Updated 7 months ago
- ☆22Updated 2 years ago
- ☆34Updated last month