laminlabs / biontyLinks
Access & manage biological ontologies.
☆20Updated 2 weeks ago
Alternatives and similar repositories for bionty
Users that are interested in bionty are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆30Updated last week
- Multimodal Data (.h5mu) implementation for Python☆102Updated last month
- Shadow objects for AnnData and MuData (experimental)☆11Updated 9 months ago
- Slides and Notebooks for scverse 2024☆17Updated last year
- Flow & mass cytometry analytics.☆57Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆40Updated last month
- Distributed single-cell data analysis.☆35Updated 2 weeks ago
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- Build contrasts for models defined with formulaic☆13Updated last week
- Single-cell multi-omics integration using Optimal Transport☆48Updated 3 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Registry for scverse ecosystem packages☆31Updated this week
- Multi-modal single cell analysis pipelines☆61Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated 11 months ago
- CZ CELLxGENE Discover Census☆114Updated last week
- Automatically annotate cell types, consistently across samples.☆17Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆62Updated 3 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 5 months ago
- ☆58Updated 6 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆84Updated last week
- ☆61Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 2 weeks ago
- A fast dataloader for bigwig files made for machine learning☆28Updated 3 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Access public biological ontologies.☆15Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 2 months ago
- Multi-omics factor analysis v2☆54Updated last month
- ☆22Updated 3 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆54Updated last week
- factor models for omics data☆30Updated this week