laminlabs / biontyLinks
Access & manage biological ontologies.
☆20Updated last week
Alternatives and similar repositories for bionty
Users that are interested in bionty are comparing it to the libraries listed below
Sorting:
- Shadow objects for AnnData and MuData (experimental)☆11Updated 7 months ago
- a dataloader to work with large single cell datasets from lamindb☆29Updated last week
- Multimodal Data (.h5mu) implementation for Python☆98Updated 4 months ago
- Flow & mass cytometry analytics.☆55Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated last month
- Distributed single-cell data analysis.☆33Updated this week
- Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format☆46Updated last month
- Code and documentation for the curation of cellxgene datasets☆49Updated last week
- Multi-modal single cell analysis pipelines☆59Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Build contrasts for models defined with formulaic☆13Updated this week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 4 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Access public biological ontologies.☆16Updated last year
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆29Updated this week
- CZ CELLxGENE Discover Census☆110Updated last week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 3 weeks ago
- ☆15Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- Single-cell multi-omics integration using Optimal Transport☆47Updated 2 months ago
- ☆22Updated 5 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Automatically annotate cell types, consistently across samples.☆16Updated 2 months ago
- ☆61Updated last year
- Create PyTorch Datasets from AnnData☆21Updated 7 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆37Updated 11 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- A fast dataloader for bigwig files made for machine learning☆28Updated 5 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- ☆56Updated 5 months ago