laminlabs / bionty
Registries for biological entities, coupled to public ontologies.
☆11Updated this week
Related projects ⓘ
Alternatives and complementary repositories for bionty
- a dataloader to work with large single cell datasets from lamindb☆15Updated this week
- Shadow objects for AnnData and MuData (experimental)☆10Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆13Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last month
- ☆25Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆25Updated this week
- Flow & mass cytometry analytics.☆42Updated this week
- Access public biological ontologies.☆16Updated 3 months ago
- single cell foundation model for Gene network inference and more☆24Updated this week
- ☆21Updated 4 years ago
- Code and documentation for the curation of cellxgene datasets☆38Updated this week
- Multimodal Data (.h5mu) implementation for Python☆78Updated last month
- ☆48Updated 10 months ago
- Test genes for Spatial Variation☆12Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆19Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 2 weeks ago
- Interoperability between SpatialData and the Xenium Explorer☆16Updated 3 months ago
- Multi-omics factor analysis v2☆36Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆14Updated 5 months ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated this week
- Distributed single-cell data analysis.☆22Updated this week
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆25Updated 3 years ago
- AnnData interoperability in R☆58Updated last week
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated 7 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- ☆28Updated this week
- ☆22Updated last month
- Fit generalized linear models in python.☆27Updated last year