laminlabs / biontyView external linksLinks
Registries for biological ontologies.
☆23Jan 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for bionty
Users that are interested in bionty are comparing it to the libraries listed below
Sorting:
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated 11 months ago
- Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-nativ…☆225Updated this week
- Read fcs files.☆12Nov 13, 2025Updated 3 months ago
- a dataloader to work with large single cell datasets from lamindb☆34Feb 4, 2026Updated last week
- Registry for scverse ecosystem packages☆34Feb 3, 2026Updated last week
- Distributed single-cell data analysis.☆36Feb 3, 2026Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Python API and Jupyter widget for Vitessce☆61Feb 5, 2026Updated last week
- Store collections of experimental data based on TileDB☆12Updated this week
- Multimodal Data (.h5mu) implementation for Python☆108Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆24Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆86Updated this week
- AnnData interoperability in R☆149Updated this week
- Build contrasts for models defined with formulaic☆12Updated this week
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- ☆11May 21, 2025Updated 8 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆23Dec 12, 2025Updated 2 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆19Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated this week
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated last month
- Flow & mass cytometry analytics.☆58Updated this week
- Code and documentation for the curation of cellxgene datasets☆53Updated this week
- ☆16Sep 8, 2024Updated last year
- Automatically annotate cell types, consistently across samples.☆18Updated this week
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Jan 19, 2025Updated last year
- Matplotlib style for scientific publications☆14Jan 19, 2026Updated 3 weeks ago
- A federated implementation of PyDESeq2, based on Substra.☆15Jan 26, 2026Updated 2 weeks ago
- ☆15Nov 24, 2025Updated 2 months ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆40Aug 20, 2025Updated 5 months ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- ☆21Feb 3, 2026Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 7 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆233Jan 2, 2026Updated last month
- CZ CELLxGENE Discover Census☆117Jan 14, 2026Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆105Updated this week
- 🏃 The go-to single-cell Foundation Model☆138Dec 18, 2025Updated last month
- single-cell latent diffusion model☆36Feb 6, 2026Updated last week