laminlabs / biontyLinks
Registries for basic biological entities, coupled to public ontologies.
☆17Updated 2 weeks ago
Alternatives and similar repositories for bionty
Users that are interested in bionty are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆29Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆31Updated 3 weeks ago
- Shadow objects for AnnData and MuData (experimental)☆12Updated 5 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated 2 months ago
- Slides and Notebooks for scverse 2024☆17Updated 11 months ago
- Flow & mass cytometry analytics.☆53Updated last week
- Code and documentation for the curation of cellxgene datasets☆49Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week
- Build contrasts for models defined with formulaic☆13Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated 2 weeks ago
- ☆55Updated 3 months ago
- Distributed single-cell data analysis.☆31Updated last week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Access public biological ontologies.☆16Updated last year
- ☆15Updated 2 weeks ago
- Multi-modal single cell analysis pipelines☆59Updated last month
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 9 months ago
- Automatically annotate cell types, consistently across samples.☆15Updated last week
- A fast dataloader for bigwig files made for machine learning☆28Updated 3 months ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 9 months ago
- CZ CELLxGENE Discover Census☆106Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆78Updated 2 months ago
- ☆66Updated last week
- Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format☆36Updated 2 weeks ago
- ☆59Updated 11 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- ☆55Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago