laminlabs / bionty
Registries for biological entities, coupled to public ontologies.
☆13Updated this week
Alternatives and similar repositories for bionty:
Users that are interested in bionty are comparing it to the libraries listed below
- a dataloader to work with large single cell datasets from lamindb☆21Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated this week
- Slides and Notebooks for scverse 2024☆17Updated 5 months ago
- Shadow objects for AnnData and MuData (experimental)☆12Updated 3 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- Access public biological ontologies.☆16Updated 7 months ago
- Flow & mass cytometry analytics.☆46Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated this week
- ☆21Updated 4 years ago
- ☆16Updated 8 months ago
- ☆21Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆90Updated 2 weeks ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- Read fcs files.☆13Updated 2 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 4 months ago
- ☆25Updated 5 months ago
- Code and documentation for the curation of cellxgene datasets☆42Updated this week
- Multi-omics factor analysis v2☆43Updated 5 months ago
- Distributed single-cell data analysis.☆29Updated this week
- A python package for chromVAR☆27Updated last year
- Multi-modal single cell analysis pipelines☆57Updated this week
- A fast dataloader for bigwig files made for machine learning☆27Updated 5 months ago
- ☆51Updated this week
- ☆29Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 3 months ago