colabobio / sciviewerView external linksLinks
☆16Sep 8, 2024Updated last year
Alternatives and similar repositories for sciviewer
Users that are interested in sciviewer are comparing it to the libraries listed below
Sorting:
- Store collections of experimental data based on TileDB☆12Updated this week
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- ☆12Nov 26, 2025Updated 2 months ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 4 years ago
- ☆11May 21, 2025Updated 8 months ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- rna2seg☆17May 15, 2025Updated 9 months ago
- USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE☆14Feb 26, 2021Updated 4 years ago
- A statistical simulator for rational scRNA-seq experimental design☆12Dec 14, 2020Updated 5 years ago
- ☆16Oct 18, 2023Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- ☆28Feb 8, 2026Updated last week
- Spatial omics analysis and visualization library☆22Feb 3, 2026Updated last week
- ☆23Feb 4, 2026Updated last week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 3 years ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Registries for biological ontologies.☆23Updated this week
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ☆19Mar 6, 2019Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- ☆22Jan 6, 2026Updated last month
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated last year
- ☆62May 21, 2025Updated 8 months ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 5 years ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆122Updated this week
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated last month