chanzuckerberg / cellxgene-censusLinks
CZ CELLxGENE Discover Census
☆105Updated this week
Alternatives and similar repositories for cellxgene-census
Users that are interested in cellxgene-census are comparing it to the libraries listed below
Sorting:
- Multimodal Data (.h5mu) implementation for Python☆99Updated 2 months ago
- single cell foundation model for Gene network inference and more☆96Updated this week
- ☆55Updated 2 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 7 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated last month
- ☆80Updated last week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆171Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 5 months ago
- Flow & mass cytometry analytics.☆53Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆42Updated last week
- Single cell omics biology annotations☆51Updated 3 months ago
- Code and documentation for the curation of cellxgene datasets☆47Updated this week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆101Updated 3 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆58Updated 9 months ago
- Python package to perform enrichment analysis from omics data.☆215Updated last week
- Single-cell perturbation analysis☆193Updated last week
- Multi-omic velocity inference☆110Updated 9 months ago
- software to detect doublets☆93Updated 7 months ago
- Python client for the OmniPath web service☆45Updated last month
- Accelerated, Python-only, single-cell integration benchmarking metrics☆63Updated last week
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆99Updated 5 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated 3 weeks ago
- pseudobulking on an AnnData object☆32Updated 4 months ago
- Convert between AnnData and SingleCellExperiment☆137Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- Non-parametric density inference for single-cell analysis.☆72Updated 2 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆46Updated last week