chanzuckerberg / cellxgene-censusLinks
CZ CELLxGENE Discover Census
☆109Updated last week
Alternatives and similar repositories for cellxgene-census
Users that are interested in cellxgene-census are comparing it to the libraries listed below
Sorting:
- Multimodal Data (.h5mu) implementation for Python☆97Updated 4 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆72Updated this week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆47Updated this week
- Python package to perform enrichment analysis from omics data.☆225Updated this week
- software to detect doublets☆95Updated 9 months ago
- ☆83Updated this week
- Multi-omic velocity inference☆111Updated 11 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆104Updated 5 months ago
- ☆56Updated 4 months ago
- single cell foundation model☆106Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- Flow & mass cytometry analytics.☆54Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated this week
- Convert between AnnData and SingleCellExperiment☆140Updated this week
- TACCO: Transfer of Annotations to Cells and their COmbinations☆59Updated last month
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆175Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- data and model repository for single-cell data☆135Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 3 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆119Updated last week
- ☆55Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆62Updated 11 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆129Updated this week