chanzuckerberg / cellxgene-censusLinks
CZ CELLxGENE Discover Census
☆114Updated this week
Alternatives and similar repositories for cellxgene-census
Users that are interested in cellxgene-census are comparing it to the libraries listed below
Sorting:
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated last month
- Multimodal Data (.h5mu) implementation for Python☆105Updated last month
- ☆61Updated 7 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆59Updated 2 weeks ago
- software to detect doublets☆95Updated last year
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆94Updated last month
- ☆85Updated 2 weeks ago
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 7 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆110Updated last month
- Accelerated, Python-only, single-cell integration benchmarking metrics☆80Updated 2 weeks ago
- Convert between AnnData and SingleCellExperiment☆143Updated 2 weeks ago
- Flow & mass cytometry analytics.☆58Updated 2 weeks ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆185Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 6 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆150Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago
- Python package to perform enrichment analysis from omics data.☆245Updated this week
- Geometry-preserving random sampling☆95Updated last year
- Clonotype Neighbor Graph Analysis☆93Updated 4 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago
- Multi-omic velocity inference☆113Updated last year
- ☆57Updated last year
- Batch balanced KNN☆176Updated 2 years ago
- Test genes for Spatial Variation☆179Updated last year
- 🏃 The go-to single-cell Foundation Model☆128Updated 3 weeks ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated 2 months ago