scverse / conference-2024
Slides and Notebooks for scverse 2024
☆17Updated 7 months ago
Alternatives and similar repositories for conference-2024:
Users that are interested in conference-2024 are comparing it to the libraries listed below
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆19Updated last week
- ☆26Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- Identification of spatial homogeneous regions☆20Updated 3 months ago
- ☆21Updated 2 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆22Updated this week
- Multi-modal single cell analysis pipelines☆57Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated this week
- ☆21Updated 4 years ago
- CAST package☆34Updated 6 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆72Updated this week
- ☆60Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆61Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 9 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated 3 weeks ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 5 months ago
- ☆43Updated 3 weeks ago
- ☆29Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆31Updated 3 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 8 months ago
- ☆17Updated 2 months ago
- Automatically annotate cell types, consistently across samples.☆10Updated 2 weeks ago
- An R package for performing cell typing in SMI and other single cell data☆34Updated 4 months ago
- Multimodal Data (.h5mu) implementation for Python☆95Updated last month
- ☆53Updated last month