Slides and Notebooks for scverse 2024
☆16Sep 24, 2024Updated last year
Alternatives and similar repositories for conference-2024
Users that are interested in conference-2024 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data Science Operations (dso) command line tool☆46Apr 13, 2026Updated 3 weeks ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆55Apr 29, 2026Updated last week
- Build contrasts for models defined with formulaic☆12Apr 27, 2026Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆27Updated this week
- Sparse Tensor Programming in Python powered by Finch.jl☆22Apr 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A performant scientific image visualization system.☆36Mar 20, 2026Updated last month
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Dec 1, 2025Updated 5 months ago
- An introduction to OME-Zarr for big bioimaging data☆26May 1, 2026Updated last week
- Interactive visualization of spatial omics data☆85May 1, 2026Updated last week
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 8 months ago
- ☆66Apr 27, 2026Updated last week
- ☆25Updated this week
- Read fcs files.☆11Nov 13, 2025Updated 5 months ago
- AnnData interoperability in R☆171Apr 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Dec 4, 2019Updated 6 years ago
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆69Apr 27, 2026Updated last week
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108May 1, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆66Apr 17, 2026Updated 3 weeks ago
- ☆29Sep 4, 2023Updated 2 years ago
- Static plotting for spatialdata☆80Updated this week
- ☆12Jul 31, 2025Updated 9 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 2 months ago
- An open and interoperable data framework for spatial omics data☆365Apr 27, 2026Updated last week
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Vector representations of gene co-expression in single cell RNAseq.☆37Apr 29, 2026Updated last week
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆248Updated this week
- ☆44Feb 12, 2026Updated 2 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single-cell perturbation analysis☆309Updated this week
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆13Apr 27, 2026Updated last week
- Single-cell multi-omics integration using Optimal Transport☆52Aug 14, 2025Updated 8 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆360Apr 30, 2026Updated last week
- ☆13Dec 20, 2025Updated 4 months ago
- ☆16Sep 21, 2021Updated 4 years ago
- Automatically annotate cell types, consistently across samples.☆20Apr 30, 2026Updated last week