Alternatives and similar repositories for conference-2024

Users that are interested in conference-2024 are comparing it to the libraries listed below

• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆31Updated 3 weeks ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆27Updated this week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆40Updated last month
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆59Updated last week
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated 3 weeks ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 2 months ago
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆15Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆35Updated this week
• almaan / eggplant
  ☆22Updated 3 years ago
• scverse / spatialdata-notebooks
  ☆55Updated this week
• scverse / spatialdata-io
  ☆68Updated this week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆82Updated 3 weeks ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆36Updated 9 months ago
• laminlabs / bionty
  Registries for basic biological entities, coupled to public ontologies.
  ☆17Updated 2 weeks ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated 11 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last month
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 7 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆48Updated last week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated this week
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆20Updated 4 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 10 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 9 months ago
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆63Updated last week
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆94Updated last month
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated last week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆64Updated last month