A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
☆267Mar 14, 2026Updated 7 months ago
Alternatives and similar repositories for scimilarity
Users that are interested in scimilarity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆103Updated this week
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆55May 27, 2026Updated 5 months ago
- Single-cell perturbation analysis☆355Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆324Oct 9, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool for semi-automatic cell type harmonization and integration☆125Mar 9, 2026Updated 7 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆137Sep 22, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆208Jan 30, 2026Updated 9 months ago
- ☆1,662Apr 29, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- ☆70Sep 13, 2024Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆408Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆482Apr 11, 2026Updated 6 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆443Oct 2, 2026Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆93Mar 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆270Jul 8, 2026Updated 3 months ago
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- UCE is a zero-shot foundation model for single-cell gene expression data☆351Jul 8, 2026Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆309Updated this week
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆27Aug 5, 2026Updated 2 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆177Nov 23, 2025Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆68May 17, 2026Updated 5 months ago
- ☆40Jun 24, 2025Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 6 months ago
- Spatial alignment of single cell transcriptomic data.☆375Jul 1, 2025Updated last year
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆511Oct 15, 2026Updated 2 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- ☆314Jun 16, 2026Updated 4 months ago