Genentech / scimilarityLinks
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
☆220Updated 4 months ago
Alternatives and similar repositories for scimilarity
Users that are interested in scimilarity are comparing it to the libraries listed below
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- Single-cell perturbation analysis☆205Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆243Updated this week
- Python package to perform enrichment analysis from omics data.☆229Updated last week
- Benchmarking analysis of data integration tools☆388Updated last month
- Reference mapping for single-cell genomics☆386Updated 3 weeks ago
- Scanpy Tutorials.☆225Updated last week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆142Updated 2 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆74Updated last week
- ☆141Updated last year
- This is the alpha version of the CellOracle package☆388Updated 9 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆175Updated last year
- A tool for semi-automatic cell type classification☆414Updated last week
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆174Updated last week
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆231Updated this week
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆62Updated 2 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆145Updated last year
- Test genes for Spatial Variation☆175Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆236Updated 9 months ago
- ☆213Updated last year
- Batch balanced KNN☆172Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆218Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆133Updated last year
- Detect doublets in single-cell RNA-seq data☆157Updated 4 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆106Updated 3 weeks ago
- Spatial alignment of single cell transcriptomic data.☆331Updated 3 months ago
- Panoramic stitching of single cell data☆291Updated 3 months ago
- 🏃 The go-to single-cell Foundation Model☆114Updated this week