MannLabs / scPortrait
☆36Updated this week
Alternatives and similar repositories for scPortrait:
Users that are interested in scPortrait are comparing it to the libraries listed below
- Interactive visualization of spatial omics data☆45Updated this week
- ☆17Updated last week
- ☆45Updated this week
- Toolbox for the analysis of smFISH images.☆58Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆73Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆49Updated 2 weeks ago
- ☆27Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Spatial Single-Cell Analysis Toolkit☆83Updated 2 weeks ago
- ☆23Updated 3 months ago
- ☆29Updated 8 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 9 months ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆44Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Static plotting for spatialdata☆41Updated this week
- ☆29Updated last year
- ☆39Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆31Updated 8 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 3 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆16Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆17Updated 5 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆52Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated last month
- ☆21Updated 4 years ago
- ☆22Updated this week
- Python API and Jupyter widget for Vitessce☆41Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 7 months ago