Deep Generative Modeling of RNA Velocity
☆38Oct 21, 2025Updated 5 months ago
Alternatives and similar repositories for VeloVAE
Users that are interested in VeloVAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- ☆11May 3, 2022Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆30Dec 3, 2024Updated last year
- ☆13Oct 24, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Sep 27, 2022Updated 3 years ago
- ☆25Aug 15, 2023Updated 2 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated last month
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 8 months ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 2 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Registries for biological ontologies.☆25Apr 10, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 5 months ago
- Python playground for cell-type-specific biology☆12Apr 8, 2026Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- ☆10Dec 4, 2023Updated 2 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- ☆42Jan 12, 2026Updated 3 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆24Oct 20, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of multiplex Leiden for analysis of spatial omics data☆18Apr 10, 2026Updated last week
- Tutorials on using latest dynamo package☆27Dec 21, 2025Updated 3 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆490Mar 17, 2026Updated last month
- ☆15Jun 27, 2025Updated 9 months ago
- ☆10Apr 24, 2024Updated last year
- Simple scVI implementation☆12Mar 16, 2026Updated last month
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆90Apr 9, 2026Updated last week
- CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure☆16Sep 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for analysing single cell data☆64Dec 8, 2022Updated 3 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 11 months ago
- ☆15Aug 5, 2022Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆25Feb 25, 2026Updated last month
- trajectory inference☆107Jan 27, 2025Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated 10 months ago