scverse / shadows
Shadow objects for AnnData and MuData (experimental)
☆10Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for shadows
- Registries for biological entities, coupled to public ontologies.☆11Updated this week
- a dataloader to work with large single cell datasets from lamindb☆15Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- Flow & mass cytometry analytics.☆42Updated this week
- ☆43Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆25Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆13Updated this week
- ☆21Updated 4 years ago
- ☆28Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 2 weeks ago
- ☆25Updated 3 months ago
- ☆23Updated last month
- Distributed single-cell data analysis.☆22Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆45Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆72Updated this week
- Identification of spatial homogeneous regions☆19Updated last month
- Static plotting for spatialdata☆35Updated this week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆38Updated 2 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆78Updated last month
- ☆22Updated last month
- Test genes for Spatial Variation☆12Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆16Updated 3 months ago
- Access public biological ontologies.☆16Updated 3 months ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated this week
- ☆16Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆70Updated 2 weeks ago
- Matplotlib style for scientific publications☆13Updated 3 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆14Updated 5 months ago