Shadow objects for AnnData and MuData (experimental)
☆11Feb 28, 2025Updated last year
Alternatives and similar repositories for shadows
Users that are interested in shadows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Registries for biological ontologies.☆27Aug 3, 2026Updated last week
- Fast array utilities☆15Updated this week
- Build contrasts for models defined with formulaic☆13Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Distributed single-cell data analysis.☆40Updated this week
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Read fcs files.☆12Nov 13, 2025Updated 8 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆77Jul 28, 2026Updated last week
- ☆17Aug 3, 2026Updated last week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆78Updated this week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Flow & mass cytometry analytics.☆61Updated this week
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- Registry for scverse ecosystem packages☆38Updated this week
- ☆10Dec 14, 2016Updated 9 years ago
- An MCP server for scRNA-Seq analysis with natural language!☆15Jul 10, 2025Updated last year
- Automatically annotate cell types, consistently across samples.☆27Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 3, 2026Updated last week
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Jul 31, 2026Updated last week
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- Static plotting for spatialdata☆82Updated this week
- A performant scientific image visualization system.☆36Updated this week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- numcodecs Rust API for buffer compression☆14Jul 20, 2026Updated 3 weeks ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆40Feb 24, 2026Updated 5 months ago
- pathlib api extended to use fsspec backends☆403Apr 27, 2026Updated 3 months ago
- Tutorials for learning scverse☆22Updated this week
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- Pipeline for harmonising immunological receptor–epitope interactions☆16Aug 3, 2026Updated last week
- Host your documentation easily on Notion☆11Oct 30, 2022Updated 3 years ago
- ☆51Jul 22, 2026Updated 2 weeks ago