Shadow objects for AnnData and MuData (experimental)
☆11Feb 28, 2025Updated last year
Alternatives and similar repositories for shadows
Users that are interested in shadows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Registries for biological ontologies.☆25Apr 23, 2026Updated 3 weeks ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆61Updated this week
- Build contrasts for models defined with formulaic☆12Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated 3 weeks ago
- Distributed single-cell data analysis.☆39Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- Read fcs files.☆11Nov 13, 2025Updated 6 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Registry for scverse ecosystem packages☆37May 11, 2026Updated last week
- ☆15Apr 7, 2026Updated last month
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Apr 20, 2026Updated 3 weeks ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- Flow & mass cytometry analytics.☆60May 11, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆43Updated this week
- ☆10Dec 14, 2016Updated 9 years ago
- factor models for omics data☆41Updated this week
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- a dataloader to work with large single cell datasets from lamindb☆40Apr 10, 2026Updated last month
- A performant scientific image visualization system.☆36Mar 20, 2026Updated 2 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17May 11, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆21Updated this week
- single-cell latent diffusion model☆51May 11, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tutorials for learning scverse☆21May 11, 2026Updated last week
- numcodecs Rust API for buffer compression☆12Updated this week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- ☆40Feb 24, 2026Updated 2 months ago
- pathlib api extended to use fsspec backends☆390Apr 27, 2026Updated 3 weeks ago
- Static plotting for spatialdata☆80Updated this week
- Host your documentation easily on Notion☆11Oct 30, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Open-source data lakehouse for biology. Context and memory for datasets and models at scale, across infrastructure. Query, trace & valida…☆264Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆70Apr 27, 2026Updated 3 weeks ago
- muon is a multimodal omics Python framework☆267May 8, 2026Updated last week
- Cookiecutter template for scverse☆89Updated this week
- ☆44Updated this week
- Retrocookie updates Cookiecutter templates with changes from generated projects☆34Jul 30, 2024Updated last year