scverse / shadows
Shadow objects for AnnData and MuData (experimental)
☆11Updated last month
Alternatives and similar repositories for shadows:
Users that are interested in shadows are comparing it to the libraries listed below
- Registries for biological entities, coupled to public ontologies.☆11Updated this week
- Build contrasts for models defined with formulaic☆11Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆15Updated this week
- a dataloader to work with large single cell datasets from lamindb☆21Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆20Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- Distributed single-cell data analysis.☆26Updated this week
- Flow & mass cytometry analytics.☆43Updated this week
- Multimodal Data (.h5mu) implementation for Python☆82Updated last week
- Slides and Notebooks for scverse 2024☆17Updated 4 months ago
- Deep exponential families for single-cell data.☆21Updated 2 months ago
- ☆21Updated 4 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆21Updated 3 weeks ago
- Access public biological ontologies.☆16Updated 5 months ago
- ☆50Updated last year
- Code and documentation for the curation of cellxgene datasets☆39Updated this week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆57Updated 10 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆54Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 3 weeks ago
- Create PyTorch Datasets from AnnData☆20Updated 3 months ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- ☆24Updated 3 months ago
- ☆16Updated 6 months ago
- A python package for chromVAR☆27Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆73Updated 2 weeks ago
- ☆20Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 5 months ago
- ☆27Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 2 months ago