VingronLab / APL
R package for computing Association Plots
☆16Updated 6 months ago
Alternatives and similar repositories for APL
Users that are interested in APL are comparing it to the libraries listed below
Sorting:
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Code used for muti cellular factor analysis☆13Updated last year
- ☆29Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- ☆22Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆41Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Collection of useful methods for single cell analysis☆14Updated 8 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆22Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- RNA velocity validation☆22Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 8 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆16Updated last month
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆11Updated 2 months ago