Alternatives and similar repositories for cell-annotator

Users that are interested in cell-annotator are comparing it to the libraries listed below

• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated last month
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆35Updated last week
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆27Updated this week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆21Updated 5 months ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 7 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆38Updated this week
• scverse / spatialdata-io
  ☆72Updated this week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆56Updated last week
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆67Updated this week
• HelenaLC / SpatialData
  ☆18Updated 4 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated last month
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated 2 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆44Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated last year
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• giovp / spatialdata-sandbox
  ☆13Updated last week
• laminlabs / bionty
  Registries for basic biological entities, coupled to public ontologies.
  ☆20Updated last week
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆36Updated 10 months ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 8 months ago
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆17Updated this week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated 2 weeks ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆18Updated 8 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated this week