quadbio / cell-annotatorLinks
Automatically annotate cell types, consistently across samples.
☆14Updated 2 months ago
Alternatives and similar repositories for cell-annotator
Users that are interested in cell-annotator are comparing it to the libraries listed below
Sorting:
- Build contrasts for models defined with formulaic☆13Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆30Updated last week
- Slides and Notebooks for scverse 2024☆17Updated 9 months ago
- ☆17Updated last month
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated last month
- Minimum Information about Tissue Imaging☆20Updated last year
- Python API and Jupyter widget for Vitessce☆49Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆25Updated this week
- Shadow objects for AnnData and MuData (experimental)☆12Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Optimal gating strategies for flow and mass cytometry.☆13Updated 3 months ago
- ☆27Updated 9 months ago
- ☆12Updated 2 months ago
- ☆63Updated 2 weeks ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 7 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- ☆29Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 11 months ago
- Static plotting for spatialdata☆62Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 3 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆19Updated last week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated this week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆72Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆14Updated 2 months ago
- Registries for biological entities, coupled to public ontologies.☆16Updated last week
- Segmentation error aware clustering for multiplexed imaging☆18Updated 6 months ago