Alternatives and similar repositories for geome

Users that are interested in geome are comparing it to the libraries listed below

• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆34Updated last month
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated last week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated this week
• theislab / scTab
  ☆62Updated last year
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated last week
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 6 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 3 weeks ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 3 years ago
• theislab / prophet
  ☆38Updated last month
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆50Updated 5 months ago
• bioFAM / mofaflex
  factor models for omics data
  ☆31Updated this week
• scverse / spatialdata-notebooks
  ☆65Updated this week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆58Updated this week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆105Updated this week
• laminlabs / bionty
  Registries for biological ontologies.
  ☆23Updated this week
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆42Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆32Updated last week
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆18Updated last year
• theislab / multicpa
  ☆15Updated 3 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated 2 years ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆27Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆14Updated 2 years ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆31Updated 3 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆32Updated 2 years ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆23Updated 9 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆59Updated this week
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year