theislab / geome
☆16Updated 8 months ago
Alternatives and similar repositories for geome:
Users that are interested in geome are comparing it to the libraries listed below
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- a dataloader to work with large single cell datasets from lamindb☆21Updated this week
- ☆14Updated 2 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 5 months ago
- ☆29Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆34Updated last week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- ☆57Updated 6 months ago
- End-to-end analysis of spatial multi-omics data☆41Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- single cell foundation model for Gene network inference and more☆15Updated 6 months ago
- Test genes for Spatial Variation☆14Updated 3 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- Create PyTorch Datasets from AnnData☆20Updated 2 weeks ago
- ☆45Updated this week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- Work with trained factor models in Python☆31Updated 4 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆23Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- CAST package☆31Updated 4 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 4 months ago
- ☆23Updated 2 months ago
- ☆24Updated 2 months ago
- ☆45Updated 2 years ago
- A python package for chromVAR☆27Updated last year
- Simple scVI implementation☆11Updated 2 weeks ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- ☆48Updated this week