Alternatives and similar repositories for geome

Users that are interested in geome are comparing it to the libraries listed below

• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆29Updated last week
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 8 months ago
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated this week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆36Updated this week
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 3 months ago
• theislab / prophet
  ☆37Updated last week
• theislab / scTab
  ☆61Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 4 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆17Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆30Updated this week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆56Updated this week
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated 2 weeks ago
• bioFAM / mofaflex
  factor models for omics data
  ☆27Updated this week
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated 10 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated 10 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 2 weeks ago
• Genentech / pascient
  ☆17Updated 6 months ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆32Updated 2 years ago
• scverse / spatialdata-notebooks
  ☆62Updated last week
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated 4 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated last week
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated 3 months ago
• Teichlab / celcomen
  ☆16Updated 2 weeks ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year