theislab / geomeLinks
☆15Updated 2 months ago
Alternatives and similar repositories for geome
Users that are interested in geome are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆29Updated last week
- Create PyTorch Datasets from AnnData☆21Updated 7 months ago
- Simple scVI implementation☆12Updated last week
- Build contrasts for models defined with formulaic☆13Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆29Updated this week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆37Updated 11 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated last year
- Distributed single-cell data analysis.☆33Updated this week
- ☆61Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 3 months ago
- Single-cell multi-omics integration using Optimal Transport☆47Updated 2 months ago
- ☆60Updated last week
- The complete FlowSOM package known from R, now available in Python!☆23Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆53Updated last week
- Flow & mass cytometry analytics.☆55Updated this week
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated 4 months ago
- Invariant Representation learning☆18Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Access & manage biological ontologies.☆20Updated last week
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated 3 weeks ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆16Updated 2 months ago
- ☆35Updated 3 weeks ago
- ☆15Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- A python package for chromVAR☆31Updated 2 years ago