theislab / geomeLinks
☆15Updated last month
Alternatives and similar repositories for geome
Users that are interested in geome are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆29Updated last week
- Simple scVI implementation☆12Updated last week
- Single-cell multi-omics integration using Optimal Transport☆46Updated last month
- Build contrasts for models defined with formulaic☆13Updated 2 weeks ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Updated 2 months ago
- Flow & mass cytometry analytics.☆54Updated last week
- Create PyTorch Datasets from AnnData☆21Updated 6 months ago
- ☆59Updated last year
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated 10 months ago
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆48Updated last week
- Invariant Representation learning☆17Updated last year
- ☆36Updated last week
- Alignment of spatial genomics data using deep Gaussian processes☆28Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 8 months ago
- Registries for basic biological entities, coupled to public ontologies.☆20Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆60Updated last month
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 months ago
- Distributed single-cell data analysis.☆31Updated this week
- Python client for the OmniPath web service☆46Updated 2 months ago
- ☆45Updated last month
- spatial transcriptome, single cell☆69Updated 2 years ago
- A python package for chromVAR☆30Updated 2 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 9 months ago
- ☆16Updated 3 weeks ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 5 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆33Updated this week
- Unified knowledge-driven network inference from omics data☆76Updated last month