theislab / geome
☆16Updated 2 months ago
Related projects: ⓘ
- a dataloader to work with large single cell datasets from lamindb☆13Updated this week
- Graph-based foundation model for spatial transcriptomics data.☆14Updated this week
- Create PyTorch Datasets from AnnData☆21Updated 7 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆27Updated last week
- Spatial reconstruction of dissociated single-cell data☆17Updated 8 months ago
- Template repository for creating novel models with scvi-tools☆19Updated last year
- ☆13Updated 2 years ago
- Static plotting for spatialdata☆27Updated this week
- Flow & mass cytometry analytics.☆41Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆18Updated this week
- Learning motif contributions to cell transitions using sequence features and graphs.☆26Updated 3 weeks ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆17Updated last month
- ☆40Updated last week
- ☆28Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆63Updated last week
- End-to-end analysis of spatial multi-omics data☆32Updated 3 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆25Updated 3 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆49Updated 3 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆24Updated 2 years ago
- A python package for chromVAR☆26Updated last year
- ☆25Updated 4 years ago
- Invariant Representation learning☆12Updated 2 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆23Updated last week
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆21Updated last year
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated 5 months ago
- Fit generalized linear models in python.☆27Updated last year
- Single-cell multi-omics integration using Optimal Transport☆36Updated 2 weeks ago
- ☆19Updated 6 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- Co-accessibility network from ATAC-seq data. Python code, based on Cicero package (R).☆13Updated last month