Code and documentation for the curation of cellxgene datasets
☆58Aug 13, 2026Updated this week
Alternatives and similar repositories for single-cell-curation
Users that are interested in single-cell-curation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CZ CELLxGENE Discover Census☆129Aug 4, 2026Updated last week
- Hosted version of cellxgene☆21Updated this week
- Registries for biological ontologies.☆27Aug 3, 2026Updated 2 weeks ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 2 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- An interactive explorer for single-cell transcriptomics data☆784Updated this week
- Read fcs files.☆12Nov 13, 2025Updated 9 months ago
- Single cell typing based on cell ontology☆54Dec 10, 2023Updated 2 years ago
- ☆15Updated this week
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Jul 28, 2026Updated 3 weeks ago
- ☆10Dec 14, 2016Updated 9 years ago
- R package for normalisation of spatial transcriptomics data☆19Updated this week
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆92Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆35Updated this week
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆47May 27, 2026Updated 2 months ago
- ☆49Jan 28, 2026Updated 6 months ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Automatically annotate cell types, consistently across samples.☆27Aug 10, 2026Updated last week
- ☆100Aug 11, 2026Updated last week
- Fast streams for block gzip files.☆15Nov 11, 2025Updated 9 months ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆75Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Jan 6, 2026Updated 7 months ago
- ☆19Updated this week
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated last week
- Multigrate: multiomic data integration for single-cell genomics☆34Aug 10, 2026Updated last week
- ☆19Feb 9, 2022Updated 4 years ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆131Jul 28, 2026Updated 3 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆326Jul 8, 2026Updated last month
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- ☆21Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated last month
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 5 months ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- Enabling research software engineers to add citability in open source software without hassle.☆10Feb 27, 2022Updated 4 years ago
- Interactive visualization of spatial omics data☆88Aug 1, 2026Updated 2 weeks ago
- [𝗜𝗖𝗠𝗟 𝟮𝟬𝟮𝟲] Dispersion loss counteracts embedding condensation and improves generalization in small language models☆19May 21, 2026Updated 2 months ago