chanzuckerberg / single-cell-curationLinks
Code and documentation for the curation of cellxgene datasets
☆50Updated last week
Alternatives and similar repositories for single-cell-curation
Users that are interested in single-cell-curation are comparing it to the libraries listed below
Sorting:
- CZ CELLxGENE Discover Census☆115Updated 3 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆105Updated this week
- Geometry-preserving random sampling☆95Updated last year
- ☆62Updated 8 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆64Updated last year
- data and model repository for single-cell data☆136Updated 2 years ago
- ☆61Updated 4 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- Multi-modal single cell analysis pipelines☆62Updated last month
- ☆62Updated last year
- Using BCR and expression for sequence embedding☆25Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated last week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆111Updated 2 months ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Updated 8 months ago
- Multi-omics factor analysis v2☆56Updated last week
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆98Updated 3 weeks ago
- Work with trained factor models in Python☆36Updated last year
- Pipeline to run scE2G☆32Updated 3 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- ☆37Updated 2 weeks ago
- software to detect doublets☆96Updated last year
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Updated 2 years ago
- Functional Associations using Variational Autoencoders☆43Updated 2 weeks ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year