Code and documentation for the curation of cellxgene datasets
☆54Apr 14, 2026Updated this week
Alternatives and similar repositories for single-cell-curation
Users that are interested in single-cell-curation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CZ CELLxGENE Discover Census☆119Jan 14, 2026Updated 3 months ago
- Registries for biological ontologies.☆25Apr 10, 2026Updated last week
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 4 months ago
- a dataloader to work with large single cell datasets from lamindb☆37Apr 10, 2026Updated last week
- Hosted version of cellxgene☆22Apr 8, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An interactive explorer for single-cell transcriptomics data☆760Apr 9, 2026Updated last week
- Read fcs files.☆12Nov 13, 2025Updated 5 months ago
- Single cell typing based on cell ontology☆54Dec 10, 2023Updated 2 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆84Mar 27, 2026Updated 2 weeks ago
- ☆10Dec 14, 2016Updated 9 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆42Updated this week
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 2 months ago
- Automatically annotate cell types, consistently across samples.☆20Apr 6, 2026Updated last week
- ☆12Nov 7, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- ☆35Updated this week
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated 10 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆250Feb 26, 2026Updated last month
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆124Updated this week
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆38Feb 6, 2026Updated 2 months ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Enabling research software engineers to add citability in open source software without hassle.☆10Feb 27, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆90Updated this week
- SQL and SQLite builds of OWL ontologies☆60Mar 30, 2026Updated 2 weeks ago
- Interactive visualization of spatial omics data☆83Updated this week
- Benchmarking analysis of data integration tools☆410Updated this week
- ☆47Jan 28, 2026Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆114Updated this week
- Multigrate: multiomic data integration for single-cell genomics☆32Updated this week
- software to detect doublets☆97Dec 28, 2024Updated last year
- 🪝 What's the latest version for each database?☆28Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆53Apr 2, 2026Updated 2 weeks ago
- ☆25Feb 25, 2026Updated last month
- ☆65May 21, 2025Updated 10 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆67Mar 31, 2026Updated 2 weeks ago
- ☆92Updated this week
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆244Apr 10, 2026Updated last week
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month