Alternatives and similar repositories for readfcs:

Users that are interested in readfcs are comparing it to the libraries listed below

• laminlabs / bionty-base
  Access public biological ontologies.
  ☆16Updated 5 months ago
• laminlabs / bionty
  Registries for biological entities, coupled to public ontologies.
  ☆11Updated this week
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated last month
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆15Updated this week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆73Updated 3 weeks ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 9 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 4 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆47Updated this week
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆33Updated 2 months ago
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆11Updated this week
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• saeyslab / harpy
  https://harpy.readthedocs.io/en/latest/
  ☆12Updated this week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆43Updated this week
• HiDiHlabs / ssam
  ☆27Updated 3 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆36Updated this week
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆19Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆17Updated 6 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• HelenaLC / SpatialData
  ☆17Updated 3 weeks ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆15Updated 3 weeks ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆55Updated this week
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆25Updated 4 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated 3 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆43Updated 2 weeks ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆52Updated this week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆45Updated this week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated 9 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆29Updated this week
• scverse / spatialdata-io
  ☆47Updated this week