laminlabs / readfcsLinks
Read fcs files.
☆12Updated 2 months ago
Alternatives and similar repositories for readfcs
Users that are interested in readfcs are comparing it to the libraries listed below
Sorting:
- Python API and Jupyter widget for Vitessce☆61Updated 2 weeks ago
- Registries for biological ontologies.☆23Updated last week
- Interactive visualization of spatial omics data☆75Updated last week
- Flow & mass cytometry analytics.☆58Updated last week
- ☆29Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Updated 11 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆27Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- Optimal gating strategies for flow and mass cytometry.☆16Updated 3 months ago
- ☆88Updated this week
- Multimodal Data (.h5mu) implementation for Python☆107Updated last week
- Access public biological ontologies.☆15Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated last year
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆105Updated this week
- Automatically annotate cell types, consistently across samples.☆18Updated last week
- Slides and Notebooks for scverse 2024☆17Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated 2 weeks ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- Build contrasts for models defined with formulaic☆12Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 3 months ago
- ☆65Updated last week
- Cookiecutter template for scverse☆87Updated last week
- Spatial Single-Cell Analysis Toolkit☆108Updated last month
- ☆18Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago