GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
☆39Jul 11, 2025Updated last year
Alternatives and similar repositories for graphcompass
Users that are interested in graphcompass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell differential expression☆19Apr 23, 2026Updated 2 months ago
- Simple scVI implementation☆13Jul 13, 2026Updated last week
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- ☆17May 21, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cookiecutter template for scverse☆89Updated this week
- Toolbox for single-cell data analysis on sample level☆25Jul 14, 2026Updated last week
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Jul 13, 2026Updated last week
- An AnnData-based framework for integrated proteomics analysis☆28Jul 8, 2026Updated last week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Jul 13, 2026Updated last week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Jul 14, 2026Updated last week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆288Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆386Updated this week
- ☆38Dec 13, 2023Updated 2 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- Fast array utilities☆15Updated this week
- ☆16Apr 7, 2026Updated 3 months ago
- Single-cell perturbation analysis☆338Updated this week
- ☆18May 15, 2026Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Cross-attention-based cell-cell interaction inference from ST data.☆22Jul 1, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated last month
- generalized principal component analysis (GLM-PCA) implemented in python☆64Feb 1, 2021Updated 5 years ago
- ☆49Jan 28, 2026Updated 5 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆25Jun 15, 2026Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- An open and interoperable data framework for spatial omics data☆382Updated this week
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 4 months ago
- ☆21Jul 10, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆37Updated this week
- Registry for scverse ecosystem packages☆37Updated this week
- ☆31Updated this week
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- ☆25Updated this week
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- Single-cell spatial omics analysis that makes you happy!☆70Jul 13, 2026Updated last week