Alternatives and similar repositories for graphcompass

Users that are interested in graphcompass are comparing it to the libraries listed below

• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆38Updated last week
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• scverse / spatialdata-notebooks
  ☆57Updated this week
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆112Updated last year
• scverse / spatialdata-io
  ☆68Updated this week
• prabhakarlab / Banksy_py
  ☆61Updated last month
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated last month
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆98Updated 2 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆48Updated this week
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆88Updated last year
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆20Updated 5 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated last month
• zcang / SpaOTsc
  ☆45Updated last month
• theislab / prophet
  ☆36Updated this week
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 8 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆55Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 10 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆43Updated last week
• theislab / scTab
  ☆59Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆27Updated last month
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆38Updated 6 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆59Updated 2 years ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆66Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆27Updated this week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆60Updated last month