Alternatives and similar repositories for bigwig-loader

Users that are interested in bigwig-loader are comparing it to the libraries listed below

• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆69Updated last year
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated last year
• regulatory-genomics / precellar
  Universal Single-Cell Genomics Preprocessing package
  ☆48Updated last week
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆28Updated this week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆43Updated 3 months ago
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆26Updated last week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago
• de-Boer-Lab / Genomic-API-for-Model-Evaluation
  GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…
  ☆19Updated last week
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 11 months ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆54Updated 2 weeks ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆87Updated 4 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 7 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆64Updated 2 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated 2 weeks ago
• mostafavilabuw / EnformerAssessment
  ☆25Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 3 weeks ago
• g-kl / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated last year
• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆57Updated this week
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆31Updated 6 months ago
• gagneurlab / absplice
  ☆39Updated 7 months ago
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆64Updated 5 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• cellatlas / human
  ☆44Updated last year
• PMBio / deeprvat
  ☆41Updated 7 months ago
• gagneurlab / scooby
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
  ☆54Updated 3 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago