pfizer-opensource / bigwig-loaderLinks
A fast dataloader for bigwig files made for machine learning
☆28Updated 4 months ago
Alternatives and similar repositories for bigwig-loader
Users that are interested in bigwig-loader are comparing it to the libraries listed below
Sorting:
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- Dataloader for applying sequence models to personalized genomics☆27Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- A Python package for gene network analysis☆32Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 7 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆84Updated 3 weeks ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 9 months ago
- Annotated sequence data☆11Updated 7 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆49Updated 2 weeks ago
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- Machine learning methods for DNA sequence analysis.☆54Updated 2 weeks ago
- ☆37Updated 2 weeks ago
- python implementation of the PAGE algorithm☆18Updated last year
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆32Updated last month
- ☆34Updated 3 weeks ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 weeks ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆44Updated 10 months ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- A python package for chromVAR☆30Updated 2 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- ☆24Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆46Updated last week
- VDJ Clonotyping & Analysis Tools☆49Updated 6 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆67Updated 2 years ago