pfizer-opensource / bigwig-loaderLinks
A fast dataloader for bigwig files made for machine learning
☆28Updated 3 months ago
Alternatives and similar repositories for bigwig-loader
Users that are interested in bigwig-loader are comparing it to the libraries listed below
Sorting:
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- Annotated sequence data☆11Updated 6 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 8 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- Machine learning methods for DNA sequence analysis.☆53Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- Builds a PEP from SRA or GEO accessions☆53Updated last month
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated 2 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆48Updated last month
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆30Updated 2 weeks ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Updated 10 months ago
- Downloader for ENCODE☆32Updated 4 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- A method for analyzing scATAC-seq experiments.☆33Updated 2 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- ☆39Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last month
- High-definition modeling of chromatin + transcriptomics data☆24Updated 4 months ago
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- ☆23Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 4 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated last week
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆30Updated last month
- ☆40Updated 2 months ago
- Explore and download data from the recount3 project☆36Updated 3 months ago
- VDJ Clonotyping & Analysis Tools☆50Updated 5 months ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆16Updated last month