A fast dataloader for bigwig files made for machine learning
☆29Dec 16, 2025Updated 2 months ago
Alternatives and similar repositories for bigwig-loader
Users that are interested in bigwig-loader are comparing it to the libraries listed below
Sorting:
- ☆25Aug 20, 2024Updated last year
- Container class to represent genomic locations and support genomic analysis☆26Updated this week
- Build contrasts for models defined with formulaic☆12Updated this week
- Machine learning methods for DNA sequence analysis.☆57Feb 2, 2026Updated 3 weeks ago
- ☆44Feb 11, 2026Updated 2 weeks ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Feb 2, 2026Updated 3 weeks ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Feb 16, 2026Updated last week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Sep 24, 2025Updated 5 months ago
- Registries for biological ontologies.☆24Feb 19, 2026Updated last week
- Flexible analysis of high-content CRISPR screening☆32Aug 21, 2025Updated 6 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Oct 4, 2024Updated last year
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Jan 8, 2026Updated last month
- An efficient tool for large-scale correlation network analysis☆14Dec 27, 2024Updated last year
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 8 months ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆59Feb 6, 2026Updated 3 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆97Nov 13, 2025Updated 3 months ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆23Dec 12, 2025Updated 2 months ago
- ☆10Dec 14, 2016Updated 9 years ago
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated last month
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- ☆16Sep 8, 2024Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Jax code for functional genomics ML☆14Mar 5, 2025Updated 11 months ago
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- ☆14Mar 14, 2024Updated last year
- A federated implementation of PyDESeq2, based on Substra.☆15Updated this week
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆17Dec 19, 2025Updated 2 months ago
- ☆14Sep 1, 2024Updated last year
- 2D Hilbert curve mapping in JavaScript☆16Jan 4, 2023Updated 3 years ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Oct 27, 2025Updated 4 months ago
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated 10 months ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago