A fast dataloader for bigwig files made for machine learning
☆29Dec 16, 2025Updated 5 months ago
Alternatives and similar repositories for bigwig-loader
Users that are interested in bigwig-loader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Aug 20, 2024Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆50Mar 22, 2026Updated last month
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- Container class to represent genomic locations and support genomic analysis☆27May 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12May 9, 2026Updated last week
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19May 6, 2026Updated 2 weeks ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Mar 29, 2026Updated last month
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆51Oct 4, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 11 months ago
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆90Sep 24, 2025Updated 7 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆96Nov 13, 2025Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Registries for biological ontologies.☆25Apr 23, 2026Updated 3 weeks ago
- ☆16Dec 3, 2025Updated 5 months ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 6 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated last year
- GREAT algorithm in Python☆15Oct 24, 2022Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated 3 weeks ago
- ☆14Sep 1, 2024Updated last year
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 10 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA-seq prediction with deep convolutional neural networks.☆239Aug 28, 2025Updated 8 months ago
- ☆10Dec 14, 2016Updated 9 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65May 8, 2026Updated last week
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆31Aug 27, 2025Updated 8 months ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆12Oct 12, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- ☆34Jan 27, 2025Updated last year
- Biological sequence analysis for the modern age.☆273Apr 23, 2026Updated 3 weeks ago
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆66Apr 17, 2026Updated last month
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year