Alternatives and similar repositories for bigwig-loader

Users that are interested in bigwig-loader are comparing it to the libraries listed below

• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆30Updated 9 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆27Updated last week
• regulatory-genomics / precellar
  Universal Single-Cell Genomics Preprocessing package
  ☆44Updated last week
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated 9 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 3 weeks ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆70Updated 11 months ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆52Updated 3 weeks ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆25Updated 7 months ago
• mostafavilabuw / EnformerAssessment
  ☆24Updated last year
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• cellatlas / human
  ☆44Updated last year
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated last week
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 4 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆32Updated last month
• ggdna / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated last year
• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆56Updated 2 months ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆85Updated last month
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 6 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆28Updated 3 weeks ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 8 months ago
• de-Boer-Lab / hashFrag
  A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
  ☆17Updated 3 weeks ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆31Updated 2 years ago
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆30Updated 4 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆61Updated 3 weeks ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆27Updated 2 years ago
• theislab / vevo_Tahoe_100m_analysis
  ☆32Updated 6 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆21Updated 2 months ago
• LukszaLab / NeoantigenEditing
  ☆20Updated 3 years ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆50Updated last week