A fast dataloader for bigwig files made for machine learning
☆29Dec 16, 2025Updated 4 months ago
Alternatives and similar repositories for bigwig-loader
Users that are interested in bigwig-loader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Aug 20, 2024Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆49Mar 22, 2026Updated last month
- Build contrasts for models defined with formulaic☆12Updated this week
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Apr 17, 2026Updated last week
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Mar 29, 2026Updated last month
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Oct 4, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 10 months ago
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆89Sep 24, 2025Updated 7 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆95Nov 13, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Registries for biological ontologies.☆25Apr 23, 2026Updated last week
- ☆16Dec 3, 2025Updated 4 months ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 6 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆61Apr 22, 2026Updated last week
- GREAT algorithm in Python☆15Oct 24, 2022Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 20, 2026Updated last week
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- ☆14Sep 1, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 10 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 8 months ago
- RNA-seq prediction with deep convolutional neural networks.☆236Aug 28, 2025Updated 8 months ago
- ☆10Dec 14, 2016Updated 9 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65Mar 20, 2026Updated last month
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆30Aug 27, 2025Updated 8 months ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆12Oct 12, 2020Updated 5 years ago
- ☆34Jan 27, 2025Updated last year
- Biological sequence analysis for the modern age.☆274Apr 23, 2026Updated last week
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated last month