sagar87 / spatialproteomicsLinks
Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: https://sagar87.github.io/spatialproteomics/ .
☆33Updated this week
Alternatives and similar repositories for spatialproteomics
Users that are interested in spatialproteomics are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆51Updated last week
- ☆68Updated this week
- Slides and Notebooks for scverse 2024☆17Updated 11 months ago
- ☆57Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆43Updated last week
- ☆29Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 2 weeks ago
- Static plotting for spatialdata☆65Updated this week
- Flow & mass cytometry analytics.☆54Updated this week
- ☆28Updated 11 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated last week
- Automatically annotate cell types, consistently across samples.☆15Updated last month
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 9 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆54Updated this week
- Spatial Single-Cell Analysis Toolkit☆98Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 5 months ago
- ☆27Updated 11 months ago
- Identification of spatial homogeneous regions☆21Updated 8 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆75Updated this week
- ☆18Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- a dataloader to work with large single cell datasets from lamindb☆29Updated last week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆60Updated last month