Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: https://sagar87.github.io/spatialproteomics/ .
☆45Jun 11, 2026Updated last month
Alternatives and similar repositories for spatialproteomics
Users that are interested in spatialproteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- Single-cell spatial omics analysis that makes you happy!☆70Jul 13, 2026Updated last week
- ☆18May 15, 2026Updated 2 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextflow version of Sopa - spatial omics pipeline and analysis☆18Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆22Jul 9, 2026Updated last week
- Piecewise alignment for layers of mosaics☆61Updated this week
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 6 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90May 25, 2026Updated last month
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 11 months ago
- ☆17May 21, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Static plotting for spatialdata☆82Jul 10, 2026Updated last week
- GNN-based cell segmentation of spatial transcriptomics data☆22Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Jul 13, 2026Updated last week
- A Python toolkit for quantitative and visual quality control of segmentation and transcript assignment in spatial omics data.☆30Updated this week
- ☆100Jul 2, 2026Updated 2 weeks ago
- Morphological features from images and masks made easy.☆48Jul 7, 2026Updated last week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 3 months ago
- ☆37Updated this week
- ☆31Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast array utilities☆15Updated this week
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last week
- ☆15Aug 17, 2023Updated 2 years ago
- Spatial omics analysis and visualization library☆27Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Interactive visualization of spatial omics data☆87Jul 2, 2026Updated 2 weeks ago
- An AnnData-based framework for integrated proteomics analysis☆28Jul 8, 2026Updated last week
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆38Jul 7, 2026Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆143Jul 8, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jul 13, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Jul 13, 2026Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Jul 13, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago