sagar87 / spatialproteomics
Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: https://sagar87.github.io/spatialproteomics/ .
☆19Updated last week
Alternatives and similar repositories for spatialproteomics:
Users that are interested in spatialproteomics are comparing it to the libraries listed below
- ☆17Updated 2 months ago
- ☆26Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- Automatically annotate cell types, consistently across samples.☆10Updated 2 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- Slides and Notebooks for scverse 2024☆17Updated 7 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆22Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Identification of spatial homogeneous regions☆20Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 9 months ago
- ☆21Updated 4 years ago
- ☆29Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆16Updated 3 weeks ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆15Updated this week
- CAST package☆34Updated 6 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- ☆60Updated last week
- ☆18Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆31Updated 3 weeks ago
- ☆13Updated 6 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆16Updated 5 months ago
- ☆12Updated 11 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆77Updated last month
- Test genes for Spatial Variation☆14Updated 4 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆12Updated this week