Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: https://sagar87.github.io/spatialproteomics/ .
☆80Aug 22, 2026Updated last week
Alternatives and similar repositories for spatialproteomics
Users that are interested in spatialproteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 3 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆72Updated this week
- ☆18Updated this week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Aug 12, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Interactive visualization of spatial omics data☆88Aug 1, 2026Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆24Updated this week
- Piecewise alignment for layers of mosaics☆61Aug 8, 2026Updated 3 weeks ago
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 7 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90May 25, 2026Updated 3 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆17Aug 20, 2026Updated last week
- GNN-based cell segmentation of spatial transcriptomics data☆22Updated this week
- Static plotting for spatialdata☆85Updated this week
- A Python toolkit for quantitative and visual quality control of segmentation and transcript assignment in spatial omics data.☆32Updated this week
- ☆101Aug 11, 2026Updated 2 weeks ago
- Morphological features from images and masks made easy.☆48Aug 19, 2026Updated last week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 5 months ago
- ☆38Aug 15, 2026Updated 2 weeks ago
- ☆31Aug 7, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast array utilities☆15Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Updated this week
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last month
- ☆15Aug 17, 2023Updated 3 years ago
- Spatial and multiomic visualization and analysis library☆55Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- An AnnData-based framework for integrated proteomics analysis☆29Aug 11, 2026Updated 2 weeks ago
- An open and interoperable data framework for spatial omics data☆387Updated this week
- Multimodal Data (.h5mu) implementation for Python☆132Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Jul 7, 2026Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆155Aug 21, 2026Updated last week
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Jul 15, 2026Updated last month
- ☆16Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Build contrasts for models defined with formulaic☆13Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago