Access public biological ontologies.
☆14Aug 7, 2024Updated 2 years ago
Alternatives and similar repositories for bionty-base
Users that are interested in bionty-base are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build contrasts for models defined with formulaic☆13Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Read fcs files.☆11Nov 13, 2025Updated 10 months ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆30Oct 16, 2021Updated 4 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- manually align specimens to annotated 3D spaces☆21May 10, 2023Updated 3 years ago
- Fast array utilities☆15Updated this week
- ☆17Jan 6, 2025Updated last year
- A highly interactive single-cell bioinformatics workflow management library. Built with dataforest☆10Oct 4, 2022Updated 3 years ago
- ☆17Updated this week
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆46Mar 6, 2023Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆60Updated this week
- ☆50Updated this week
- Pipeline for harmonising immunological receptor–epitope interactions☆17Sep 2, 2026Updated 3 weeks ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Open-source data management for multimodal AI. Query, trace, and govern with a lineage-native, format-agnostic lakehouse for agents and t…☆368Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆14Aug 3, 2023Updated 3 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆29Jul 17, 2025Updated last year
- Retrocookie updates Cookiecutter templates with changes from generated projects☆36Jul 30, 2024Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆86Feb 17, 2025Updated last year
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆20Sep 1, 2026Updated 3 weeks ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- The BioContextAI Registry for biomedical MCP servers☆23Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- Python interface to TileDB Cloud REST API☆15May 5, 2026Updated 4 months ago
- Manage biological ontologies.☆27Updated this week
- Biology-centered data-driven quality control for scRNA-seq☆21May 22, 2023Updated 3 years ago
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- Bad link reporter for GitHub repositories☆13Aug 3, 2026Updated last month
- 🎡 Unified access to OLS instances like from the EBI and TIB☆14Apr 20, 2026Updated 5 months ago