Alternatives and similar repositories for cellarium-ml

Users that are interested in cellarium-ml are comparing it to the libraries listed below

• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆26Updated this week
• altoslabs / perturbench
  ☆26Updated last week
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆47Updated 4 months ago
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆14Updated last week
• const-ae / linear_perturbation_prediction-Paper
  ☆23Updated 3 weeks ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆16Updated 8 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆59Updated this week
• theislab / prophet
  ☆32Updated 3 weeks ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated last week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆38Updated last week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆43Updated this week
• theislab / scTab
  ☆58Updated 8 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆18Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆30Updated 2 months ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated 2 months ago
• lilab-bcb / harmony-pytorch
  ☆54Updated last week
• Center-for-Health-Data-Science / multiDGD
  ☆25Updated last week
• Genentech / sVAE
  ☆63Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆23Updated this week
• scverse / simple-scvi
  Simple scVI implementation
  ☆11Updated last week
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆88Updated last month
• theislab / multicpa
  ☆14Updated 2 years ago
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆27Updated 3 years ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆154Updated 2 years ago