cellarium-ai / cellarium-ml

Related projects ⓘ

Alternatives and complementary repositories for cellarium-ml

• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated last year
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆77Updated 3 weeks ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆42Updated this week
• laminlabs / bionty
  Registries for biological entities, coupled to public ontologies.
  ☆11Updated this week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆49Updated this week
• theislab / prophet
  ☆25Updated 2 months ago
• lilab-bcb / harmony-pytorch
  ☆47Updated 10 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆15Updated 2 weeks ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆19Updated this week
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆13Updated 2 weeks ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated 7 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆44Updated 4 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated 10 months ago
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆20Updated this week
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆10Updated 3 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆35Updated 3 weeks ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆12Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆19Updated last month
• nitzanlab / biolord
  ☆66Updated 3 months ago
• theislab / moscot
  Multi-omic single-cell optimal transport tools
  ☆115Updated this week
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated last month
• theislab / multicpa
  ☆13Updated 2 years ago
• theislab / scTab
  ☆45Updated last month
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆56Updated last year
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated last month
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆60Updated last year
• Teichlab / sctk
  ☆22Updated last month
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆142Updated 2 years ago