cellarium-ai / cellarium-ml
Distributed single-cell data analysis.
☆22Updated this week
Related projects ⓘ
Alternatives and complementary repositories for cellarium-ml
- Template repository for creating novel models with scvi-tools☆19Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆44Updated 4 months ago
- Matplotlib style for scientific publications☆13Updated 3 weeks ago
- ☆56Updated last year
- ☆49Updated 10 months ago
- ☆25Updated 3 months ago
- Multimodal Data (.h5mu) implementation for Python☆78Updated last month
- Spatial reconstruction of dissociated single-cell data☆17Updated 10 months ago
- Deep exponential families for single-cell data.☆20Updated last week
- A python package for chromVAR☆27Updated last year
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated 7 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆49Updated this week
- ☆68Updated 3 months ago
- Flow & mass cytometry analytics.☆42Updated this week
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Python client for the OmniPath web service☆39Updated 5 months ago
- ☆13Updated 2 years ago
- Test genes for Spatial Variation☆12Updated last year
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- Registries for biological entities, coupled to public ontologies.☆11Updated this week
- End-to-end analysis of spatial multi-omics data☆35Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆19Updated last month
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆29Updated 5 months ago
- ☆49Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆23Updated last month
- ☆97Updated last year
- a dataloader to work with large single cell datasets from lamindb☆15Updated this week
- ☆20Updated 2 years ago