Distributed single-cell data analysis.
☆40Jul 28, 2026Updated this week
Alternatives and similar repositories for cellarium-ml
Users that are interested in cellarium-ml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- single-cell latent diffusion model☆58Updated this week
- Registries for biological ontologies.☆26Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Updated this week
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- ☆15Jan 9, 2022Updated 4 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆72Updated this week
- ☆40Feb 24, 2026Updated 5 months ago
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆75Updated this week
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated 2 years ago
- Models and datasets for perturbational single-cell omics☆179Aug 19, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Dec 4, 2023Updated 2 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆437Jun 30, 2026Updated 3 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- ☆15Jul 8, 2022Updated 4 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 11 months ago
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 7 months ago
- ☆16Sep 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆89Feb 17, 2026Updated 5 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- Simple scVI implementation☆13Jul 13, 2026Updated 2 weeks ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆51Jan 30, 2026Updated 5 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Jul 20, 2026Updated last week
- 🏃🏃 Your next-gen single-cell Foundation Model☆37Jul 18, 2026Updated last week
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Jun 30, 2020Updated 6 years ago
- A σ-VAE implementation in TensorFLow☆16Mar 24, 2023Updated 3 years ago
- CZ CELLxGENE Discover Census☆129Jun 25, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Single-cell perturbation analysis☆338Updated this week
- ☆12Nov 9, 2022Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 3 months ago
- ☆40Jun 24, 2025Updated last year
- Matplotlib style for scientific publications☆14Jul 13, 2026Updated 2 weeks ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆131Updated this week