cellarium-ai / cellarium-mlLinks
Distributed single-cell data analysis.
☆31Updated last week
Alternatives and similar repositories for cellarium-ml
Users that are interested in cellarium-ml are comparing it to the libraries listed below
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆26Updated this week
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆60Updated last week
- Matplotlib style for scientific publications☆14Updated 3 weeks ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 weeks ago
- ☆28Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated this week
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year
- ☆23Updated last month
- ☆34Updated last month
- ☆54Updated last month
- pseudobulking on an AnnData object☆32Updated 3 months ago
- A method for analyzing scATAC-seq experiments.☆31Updated 3 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- A python package for chromVAR☆28Updated 2 years ago
- Geometry-preserving random sampling☆87Updated 7 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆44Updated this week
- ☆63Updated last year
- Deep exponential families for single-cell data.☆21Updated 7 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆88Updated last month
- ☆59Updated 9 months ago
- Flow & mass cytometry analytics.☆52Updated 2 weeks ago
- single cell foundation model for Gene network inference and more☆17Updated this week
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- CZ CELLxGENE Discover Census☆103Updated this week
- Simple scVI implementation☆11Updated last week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated last week