Build contrasts for models defined with formulaic
☆13Jun 29, 2026Updated this week
Alternatives and similar repositories for formulaic-contrasts
Users that are interested in formulaic-contrasts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- ☆15Apr 7, 2026Updated 2 months ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jun 22, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 7 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Updated this week
- Flow & mass cytometry analytics.☆60Jun 22, 2026Updated last week
- ☆17Jan 6, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- Automatically annotate cell types, consistently across samples.☆24Jun 22, 2026Updated last week
- Registry for scverse ecosystem packages☆37Jun 22, 2026Updated last week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Python implementation of bulk RNAseq deconvolution algorithms☆46Jul 21, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Read fcs files.☆12Nov 13, 2025Updated 7 months ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Mar 6, 2023Updated 3 years ago
- A federated implementation of PyDESeq2, based on Substra.☆18Jun 22, 2026Updated last week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆46Jun 1, 2026Updated last month
- Single-cell spatial omics analysis that makes you happy!☆69Updated this week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆72Jun 23, 2026Updated last week
- Python code for implementing embeddings in the Wasserstein space of elliptical distributions☆11Jul 22, 2020Updated 5 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- factor models for omics data☆45Updated this week
- Static plotting for spatialdata☆82Jun 24, 2026Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 7 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Jun 22, 2026Updated last week
- The complete FlowSOM package known from R, now available in Python!☆31Jun 22, 2026Updated last week
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 6 months ago
- Container class to represent genomic locations and support genomic analysis☆27Jun 22, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 3 weeks ago
- Biology-centered data-driven quality control for scRNA-seq☆21May 22, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆16Updated this week
- Multimodal Data (.h5mu) implementation for Python☆124Updated this week
- Tutorials for learning scverse☆22Jun 22, 2026Updated last week
- Software package to design bridge RNAs as described by Durrant & Perry et al.☆26Sep 25, 2025Updated 9 months ago
- numcodecs Rust API for buffer compression☆14Updated this week
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- Interactive visualization of spatial omics data☆86May 15, 2026Updated last month