scverse / formulaic-contrastsLinks
Build contrasts for models defined with formulaic
☆12Updated this week
Alternatives and similar repositories for formulaic-contrasts
Users that are interested in formulaic-contrasts are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Access public biological ontologies.☆15Updated last year
- Slides and Notebooks for scverse 2024☆17Updated last year
- Automatically annotate cell types, consistently across samples.☆17Updated this week
- factor models for omics data☆31Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Updated 11 months ago
- ☆15Updated 2 months ago
- Registry for scverse ecosystem packages☆32Updated last week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Registries for biological ontologies.☆23Updated this week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last month
- ☆40Updated last week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Updated last year
- The complete FlowSOM package known from R, now available in Python!☆27Updated this week
- Optimal gating strategies for flow and mass cytometry.☆16Updated 2 months ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated 2 years ago
- a dataloader to work with large single cell datasets from lamindb☆34Updated last month
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Updated 2 months ago
- Distributed single-cell data analysis.☆35Updated last week
- ☆29Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆14Updated last year
- ☆30Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated last week
- Multimodal Data (.h5mu) implementation for Python☆105Updated this week
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- Create PyTorch Datasets from AnnData☆21Updated 3 weeks ago
- Spatial omics analysis and visualization library☆22Updated last week