scverse / formulaic-contrastsLinks
Build contrasts for models defined with formulaic
☆13Updated this week
Alternatives and similar repositories for formulaic-contrasts
Users that are interested in formulaic-contrasts are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Automatically annotate cell types, consistently across samples.☆15Updated 2 weeks ago
- Registries for basic biological entities, coupled to public ontologies.☆17Updated this week
- Access public biological ontologies.☆16Updated last year
- Fit generalized linear models in python.☆28Updated 2 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Updated 6 months ago
- ☆15Updated 3 weeks ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week
- Slides and Notebooks for scverse 2024☆17Updated 11 months ago
- a dataloader to work with large single cell datasets from lamindb☆29Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆32Updated last month
- The complete FlowSOM package known from R, now available in Python!☆22Updated this week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 9 months ago
- ☆34Updated this week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- Optimal gating strategies for flow and mass cytometry.☆14Updated 4 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Updated last month
- A fast dataloader for bigwig files made for machine learning☆28Updated 4 months ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- ☆12Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- ☆28Updated 10 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 11 months ago
- Create PyTorch Datasets from AnnData☆21Updated 5 months ago
- ☆22Updated 5 years ago
- script + metadata = standalone component☆43Updated last week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 3 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago