Build contrasts for models defined with formulaic
☆13Oct 19, 2026Updated last week
Alternatives and similar repositories for formulaic-contrasts
Users that are interested in formulaic-contrasts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast array utilities☆15Oct 23, 2026Updated last week
- GREAT algorithm in Python☆17Oct 24, 2022Updated 4 years ago
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- ☆17Sep 27, 2026Updated last month
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 11 months ago
- Analysis framework for morphological profiling data☆14Updated this week
- Flow & mass cytometry analytics.☆61Oct 19, 2026Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 3 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- ☆17Jan 6, 2025Updated last year
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆48Jul 8, 2026Updated 3 months ago
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated 2 years ago
- SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of…☆16Updated this week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- A federated implementation of PyDESeq2, based on Substra.☆18Updated this week
- A library for interfacing with SpatialData stores in TS/JS☆11Updated this week
- Read fcs files.☆11Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Sep 17, 2026Updated last month
- Tutorials for learning scverse☆23Updated this week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆46Mar 6, 2023Updated 3 years ago
- Python code for implementing embeddings in the Wasserstein space of elliptical distributions☆11Jul 22, 2020Updated 6 years ago
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Oct 19, 2026Updated last week
- Static plotting for spatialdata☆89Oct 19, 2026Updated last week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated last month
- Interpret perturbation responses from scRNA-seq perturbation experiments☆20Mar 4, 2025Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆84Updated this week
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Registry for scverse ecosystem packages☆42Oct 20, 2026Updated last week
- Single-cell differential expression☆22Oct 18, 2026Updated last week