Multimodal Data (.h5mu) implementation for Python
☆134Oct 2, 2026Updated last week
Alternatives and similar repositories for mudata
Users that are interested in mudata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- muon is a multimodal omics Python framework☆279Updated this week
- An open and interoperable data framework for spatial omics data☆399Updated this week
- Fast array utilities☆15Oct 2, 2026Updated last week
- Single-cell perturbation analysis☆347Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆103Sep 22, 2026Updated 2 weeks ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated 2 weeks ago
- Annotated data.☆776Updated this week
- Spatial Single Cell Analysis in Python☆601Updated this week
- Static plotting for spatialdata☆86Sep 28, 2026Updated last week
- AnnData interoperability in R☆198Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆71Updated this week
- Build contrasts for models defined with formulaic☆13Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Sep 17, 2026Updated 3 weeks ago
- Python package to perform enrichment analysis from omics data.☆296Updated this week
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆400Updated this week
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Cookiecutter template for scverse☆90Updated this week
- Single-cell epigenomics analysis tools☆326Sep 12, 2026Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- LIANA+: an all-in-one framework for cell-cell communication☆319Sep 24, 2026Updated 2 weeks ago
- Manage biological ontologies.☆27Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,702Updated this week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆87Feb 17, 2025Updated last year
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last month
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆271Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 28, 2026Updated last week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- Facilitating the use of Deep Visual Proteomics☆18Sep 16, 2026Updated 3 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆266Sep 30, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆153Dec 5, 2024Updated last year
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆39Updated this week