scverse / mudata
Multimodal Data (.h5mu) implementation for Python
☆78Updated last month
Related projects ⓘ
Alternatives and complementary repositories for mudata
- CZ CELLxGENE Discover Census☆86Updated this week
- Code and documentation for the curation of cellxgene datasets☆38Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- ☆48Updated 10 months ago
- Single-Cell Clustering Assessment Framework☆93Updated last year
- Flow & mass cytometry analytics.☆42Updated this week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆98Updated 3 weeks ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆111Updated 2 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆50Updated 3 months ago
- Convert between AnnData and SingleCellExperiment☆129Updated this week
- ☆25Updated 3 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆46Updated 4 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆49Updated this week
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆81Updated 2 weeks ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆53Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- ☆23Updated 2 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- Single cell omics biology annotations☆48Updated 2 months ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆49Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 2 weeks ago
- ☆39Updated this week