scverse / mudataLinks
Multimodal Data (.h5mu) implementation for Python
☆98Updated 2 months ago
Alternatives and similar repositories for mudata
Users that are interested in mudata are comparing it to the libraries listed below
Sorting:
- CZ CELLxGENE Discover Census☆106Updated this week
- ☆55Updated 3 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 4 months ago
- Flow & mass cytometry analytics.☆53Updated last week
- ☆44Updated 2 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 8 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆92Updated 3 weeks ago
- Python package to perform normalization and variance-stabilization of single-cell data☆24Updated last month
- Accelerated, Python-only, single-cell integration benchmarking metrics☆67Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated last month
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated last year
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week
- Multi-omics factor analysis v2☆48Updated 10 months ago
- Multi-modal single cell analysis pipelines☆59Updated last month
- Convert between AnnData and SingleCellExperiment☆138Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Unified knowledge-driven network inference from omics data☆72Updated 3 weeks ago
- Python client for the OmniPath web service☆45Updated last month
- software to detect doublets☆93Updated 7 months ago
- data and model repository for single-cell data☆135Updated last year
- Code and documentation for the curation of cellxgene datasets☆49Updated this week
- a dataloader to work with large single cell datasets from lamindb☆29Updated this week
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆44Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month