scverse / mudataLinks
Multimodal Data (.h5mu) implementation for Python
☆102Updated last month
Alternatives and similar repositories for mudata
Users that are interested in mudata are comparing it to the libraries listed below
Sorting:
- CZ CELLxGENE Discover Census☆114Updated last week
- ☆58Updated 6 months ago
- Flow & mass cytometry analytics.☆57Updated last week
- data and model repository for single-cell data☆136Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated 2 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆84Updated last week
- ☆48Updated last week
- Convert between AnnData and SingleCellExperiment☆142Updated last week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆79Updated this week
- Batch balanced KNN☆176Updated 2 years ago
- Multi-omics factor analysis v2☆54Updated last month
- Unified knowledge-driven network inference from omics data☆87Updated last month
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated 3 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- muon is a multimodal omics Python framework☆257Updated 3 weeks ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Updated last week
- software to detect doublets☆95Updated 11 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆123Updated last week
- spatial transcriptome, single cell☆71Updated 2 years ago
- Multi-modal single cell analysis pipelines☆61Updated last month
- Single-cell perturbation analysis☆217Updated last week
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆54Updated last week
- Python package to perform enrichment analysis from omics data.☆241Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆62Updated 3 months ago
- Geometry-preserving random sampling☆95Updated last year