Multimodal Data (.h5mu) implementation for Python
☆123Jun 22, 2026Updated last week
Alternatives and similar repositories for mudata
Users that are interested in mudata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- muon is a multimodal omics Python framework☆271May 8, 2026Updated last month
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Updated this week
- An open and interoperable data framework for spatial omics data☆381Jun 22, 2026Updated last week
- Spatial Single Cell Analysis in Python☆578Updated this week
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Annotated data.☆755Updated this week
- Single-cell perturbation analysis☆330Updated this week
- Build contrasts for models defined with formulaic☆13Jun 22, 2026Updated last week
- AnnData interoperability in R☆188Updated this week
- Automatically annotate cell types, consistently across samples.☆24Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆84Feb 17, 2025Updated last year
- Registries for biological ontologies.☆26Jun 18, 2026Updated last week
- a dataloader to work with large single cell datasets from lamindb☆40May 20, 2026Updated last month
- Registry for scverse ecosystem packages☆37Jun 22, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Updated this week
- Tutorials for Squidpy☆35Jun 19, 2026Updated last week
- Cookiecutter template for scverse☆89Updated this week
- Models and datasets for perturbational single-cell omics☆179Aug 19, 2022Updated 3 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Updated this week
- CZ CELLxGENE Discover Census☆128Updated this week
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- Benchmarking analysis of data integration tools☆423Apr 27, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single-cell epigenomics analysis tools☆321Updated this week
- Multi-resolution Variational Inference☆23May 25, 2026Updated last month
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆378Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆259Updated this week
- Interactive visualization of spatial omics data☆86May 15, 2026Updated last month
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆274Apr 26, 2026Updated 2 months ago
- ☆98Jun 8, 2026Updated 3 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆69Jun 22, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆195Mar 9, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jun 22, 2026Updated last week
- Use cases for anndata.☆14Jun 15, 2026Updated 2 weeks ago
- ☆30Oct 4, 2024Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated 2 months ago
- Test genes for Spatial Variation