scverse / mudataLinks
Multimodal Data (.h5mu) implementation for Python
☆99Updated 2 months ago
Alternatives and similar repositories for mudata
Users that are interested in mudata are comparing it to the libraries listed below
Sorting:
- CZ CELLxGENE Discover Census☆105Updated this week
- Flow & mass cytometry analytics.☆53Updated last week
- ☆55Updated 2 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆101Updated 3 months ago
- data and model repository for single-cell data☆135Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆63Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- Code and documentation for the curation of cellxgene datasets☆47Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 7 months ago
- ☆44Updated last week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated last year
- Convert between AnnData and SingleCellExperiment☆137Updated last week
- Single-cell perturbation analysis☆193Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated last week
- muon is a multimodal omics Python framework☆239Updated 5 months ago
- Batch balanced KNN☆167Updated last year
- ☆54Updated last week
- Python package to perform enrichment analysis from omics data.☆215Updated last week
- a dataloader to work with large single cell datasets from lamindb☆29Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆46Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆120Updated 3 weeks ago
- software to detect doublets☆93Updated 7 months ago
- trajectory inference☆104Updated 6 months ago
- Multi-modal single cell analysis pipelines☆59Updated 2 weeks ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆25Updated this week
- Python package to perform normalization and variance-stabilization of single-cell data☆24Updated 2 weeks ago
- A python port of the R package SCTransform:☆20Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Multi-omics factor analysis v2☆47Updated 9 months ago