cantinilab / scPRINT
single cell foundation model for Gene network inference and more
☆77Updated this week
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below
Sorting:
- End-to-end analysis of spatial multi-omics data☆71Updated last month
- Accelerated, Python-only, single-cell integration benchmarking metrics☆58Updated last week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆125Updated 2 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆62Updated 2 years ago
- Predict RNA velocity through deep learning☆69Updated last year
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- Code for evaluating single cell foundation models scBERT and scGPT☆43Updated 8 months ago
- ☆78Updated 9 months ago
- ☆58Updated 8 months ago
- Code and documentation for the curation of cellxgene datasets☆44Updated this week
- spatial transcriptome, single cell☆68Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- ☆75Updated last week
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆54Updated 6 months ago
- ☆103Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 2 months ago
- Modeling complex perturbations with CellFlow☆34Updated this week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆130Updated 2 years ago
- Multi-omic velocity inference☆110Updated 6 months ago
- Cell cycle inference in single-cell RNA-seq☆46Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆95Updated 2 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- Single cell omics biology annotations☆51Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- Python implementation of the Slingshot pseudotime algorithm☆60Updated last year
- ☆31Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆106Updated 7 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated 5 months ago
- ☆47Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆36Updated 2 weeks ago