Alternatives and similar repositories for scPRINT

Users that are interested in scPRINT are comparing it to the libraries listed below

• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆151Updated 8 months ago
• snap-stanford / SATURN
  ☆141Updated last year
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆61Updated last week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆94Updated 2 months ago
• nitzanlab / biolord
  ☆85Updated last year
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆63Updated 2 weeks ago
• const-ae / linear_perturbation_prediction-Paper
  ☆56Updated 3 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆74Updated this week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆53Updated last week
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated last year
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆142Updated 2 years ago
• czi-ai / transcriptformer
  ☆87Updated last month
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆165Updated 3 years ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆110Updated last week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆59Updated last year
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆106Updated 3 weeks ago
• theislab / prophet
  ☆35Updated last month
• theislab / scTab
  ☆61Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• scverse / pertpy
  Single-cell perturbation analysis
  ☆204Updated last week
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆57Updated 4 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆48Updated 2 weeks ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆220Updated 4 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆92Updated 2 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• biomed-AI / CellFM
  ☆84Updated 2 months ago
• bowang-lab / DeepVelo
  ☆46Updated last year
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆98Updated last month
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆115Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated last month