cantinilab / scPRINT
single cell foundation model for Gene network inference and more
☆20Updated last week
Related projects ⓘ
Alternatives and complementary repositories for scPRINT
- ☆44Updated last month
- ☆26Updated 9 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆23Updated last month
- ☆25Updated 2 months ago
- ☆26Updated 10 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- ☆20Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆59Updated 6 months ago
- Single cell omics biology annotations☆48Updated last month
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- ☆45Updated last week
- ☆48Updated 7 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆18Updated 3 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆30Updated last year
- cTPnet Package☆23Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated 6 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆18Updated 2 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆55Updated 3 weeks ago
- ☆20Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆28Updated 3 months ago
- Template repository for creating novel models with scvi-tools☆19Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- ☆28Updated last month
- ☆47Updated 10 months ago
- ☆13Updated 2 years ago