🏃 The go-to single-cell Foundation Model
☆148May 20, 2026Updated this week
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆40Updated this week
- ☆113Aug 18, 2025Updated 9 months ago
- single cell foundation model for Gene network inference and more☆20Nov 24, 2025Updated 5 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 9 months ago
- ☆65Sep 13, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆21Apr 30, 2025Updated last year
- ☆410Nov 23, 2025Updated 6 months ago
- ☆37Feb 20, 2026Updated 3 months ago
- Modeling complex perturbations with CellFlow☆142Updated this week
- End-to-end analysis of spatial multi-omics data☆115May 15, 2026Updated last week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆363Feb 1, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆256Jan 16, 2026Updated 4 months ago
- ☆449Jan 21, 2026Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Arc Virtual Cell Atlas☆522Feb 12, 2026Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆31Dec 3, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago
- Single-Cell Inference of Class Switch Recombination☆22Feb 11, 2026Updated 3 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆37Mar 10, 2025Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆164Nov 23, 2025Updated 6 months ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- ☆83Jan 9, 2026Updated 4 months ago
- ☆165Jul 3, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆17Oct 5, 2024Updated last year
- Python playground for cell-type-specific biology☆14May 11, 2026Updated last week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆54Jan 17, 2022Updated 4 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Registries for biological ontologies.☆25Apr 23, 2026Updated last month
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆203May 12, 2026Updated last week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆133May 5, 2025Updated last year
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆130Apr 28, 2026Updated 3 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆255Feb 26, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14May 4, 2026Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆186Aug 12, 2025Updated 9 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆34Mar 1, 2026Updated 2 months ago
- ☆317Mar 18, 2024Updated 2 years ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year