cantinilab / scPRINTLinks
single cell foundation model
☆97Updated this week
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆140Updated 6 months ago
- End-to-end analysis of spatial multi-omics data☆90Updated 2 weeks ago
- ☆81Updated last year
- ☆59Updated 11 months ago
- CZ CELLxGENE Discover Census☆106Updated last week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated 5 months ago
- ☆135Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆68Updated last week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆48Updated last week
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆59Updated 7 months ago
- Single-cell perturbation analysis☆196Updated last week
- spatial transcriptome, single cell☆69Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- ☆73Updated this week
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated 10 months ago
- ☆55Updated last year
- ☆47Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆44Updated 2 weeks ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆62Updated last year
- ☆36Updated 3 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 7 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆60Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆66Updated 2 years ago
- Multi-omic velocity inference☆110Updated 10 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Models and datasets for perturbational single-cell omics☆161Updated 3 years ago
- ☆46Updated last year
- ☆113Updated 2 months ago