🏃 The go-to single-cell Foundation Model
☆156Aug 6, 2026Updated this week
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- 🏃🏃 Your next-gen single-cell Foundation Model☆38Updated this week
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 2 months ago
- ☆118Aug 18, 2025Updated 11 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆39Jul 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆391Feb 1, 2025Updated last year
- Single-cell perturbation analysis☆338Updated this week
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆423Nov 23, 2025Updated 8 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- ☆38Jun 8, 2026Updated 2 months ago
- Modeling complex perturbations with CellFlow☆154Updated this week
- ☆13Sep 30, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆99May 6, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆37Mar 1, 2026Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆24Jan 31, 2026Updated 6 months ago
- Code and example of the D-SPIN framework☆39Aug 5, 2026Updated last week
- UCE is a zero-shot foundation model for single-cell gene expression data☆322Jul 8, 2026Updated last month
- inferring regulatory cellular dynamics☆181Aug 4, 2026Updated last week
- ☆68Sep 13, 2024Updated last year
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 9 months ago
- ☆52Jun 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- Single cell omics biology annotations☆61Jul 7, 2026Updated last month
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆215May 12, 2026Updated 3 months ago
- ☆94Updated this week
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- ☆111Jul 16, 2026Updated 3 weeks ago
- ☆31Jan 22, 2025Updated last year
- Open-source data management for multimodal AI. Query, trace, and govern data with a lineage-native lakehouse for files, tables, arrays, o…☆280Updated this week
- Single-Cell (Perturbation) Model Library☆125Jul 27, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆157Nov 6, 2025Updated 9 months ago
- GeneCompass☆120Feb 10, 2026Updated 6 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆110Apr 7, 2026Updated 4 months ago
- ☆21Nov 12, 2025Updated 9 months ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆163Jun 3, 2026Updated 2 months ago
- ☆25Jul 22, 2026Updated 3 weeks ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆170Nov 23, 2025Updated 8 months ago