🏃 The go-to single-cell Foundation Model
☆142Feb 20, 2026Updated last month
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆36Feb 19, 2026Updated last month
- ☆105Aug 18, 2025Updated 7 months ago
- single cell foundation model for Gene network inference and more☆20Nov 24, 2025Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆36Jul 29, 2025Updated 8 months ago
- ☆65Sep 13, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆20Apr 30, 2025Updated 11 months ago
- ☆401Nov 23, 2025Updated 4 months ago
- ☆36Feb 20, 2026Updated last month
- Modeling complex perturbations with CellFlow☆130Updated this week
- End-to-end analysis of spatial multi-omics data☆108Jan 26, 2026Updated 2 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆352Feb 1, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 2 months ago
- ☆426Jan 21, 2026Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Arc Virtual Cell Atlas☆510Feb 12, 2026Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆30Dec 3, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- Python playground for cell-type-specific biology☆12Updated this week
- Single-Cell Inference of Class Switch Recombination☆21Feb 11, 2026Updated 2 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆159Nov 23, 2025Updated 4 months ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆120Mar 16, 2026Updated 3 weeks ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Single cell omics biology annotations☆55Feb 26, 2026Updated last month
- ☆81Jan 9, 2026Updated 3 months ago
- ☆164Jul 3, 2024Updated last year
- Registries for biological ontologies.☆25Apr 2, 2026Updated last week
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆55Jan 17, 2022Updated 4 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆199Mar 9, 2026Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128May 5, 2025Updated 11 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- UCE is a zero-shot foundation model for single-cell gene expression data☆250Feb 26, 2026Updated last month
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Feb 10, 2026Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆184Aug 12, 2025Updated 8 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- ☆153Jan 30, 2026Updated 2 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆30Mar 1, 2026Updated last month