🏃 The go-to single-cell Foundation Model
☆155May 20, 2026Updated 2 months ago
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- 🏃🏃 Your next-gen single-cell Foundation Model☆37Updated this week
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 2 months ago
- ☆117Aug 18, 2025Updated 11 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆38Jul 29, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆385Feb 1, 2025Updated last year
- Single-cell perturbation analysis☆339Updated this week
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆421Nov 23, 2025Updated 8 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Updated this week
- ☆38Jun 8, 2026Updated last month
- Modeling complex perturbations with CellFlow☆151Updated this week
- ☆13Sep 30, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆92May 6, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆24Jan 31, 2026Updated 5 months ago
- Code and example of the D-SPIN framework☆39May 12, 2026Updated 2 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆311Jul 8, 2026Updated 2 weeks ago
- inferring regulatory cellular dynamics☆176Updated this week
- ☆67Sep 13, 2024Updated last year
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 8 months ago
- ☆51Jun 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 6 months ago
- Single cell omics biology annotations☆60Jul 7, 2026Updated 2 weeks ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆214May 12, 2026Updated 2 months ago
- ☆89Feb 17, 2026Updated 5 months ago
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- ☆109Jul 16, 2026Updated last week
- ☆31Jan 22, 2025Updated last year
- Open-source data management for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & …☆276Updated this week
- Single-Cell (Perturbation) Model Library☆116Jul 1, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆155Nov 6, 2025Updated 8 months ago
- GeneCompass☆119Feb 10, 2026Updated 5 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆109Apr 7, 2026Updated 3 months ago
- ☆20Nov 12, 2025Updated 8 months ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆158Jun 3, 2026Updated last month
- ☆24Updated this week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆166Nov 23, 2025Updated 8 months ago