🏃 The go-to single-cell Foundation Model
☆146Feb 20, 2026Updated 2 months ago
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆40Apr 10, 2026Updated 3 weeks ago
- ☆110Aug 18, 2025Updated 8 months ago
- single cell foundation model for Gene network inference and more☆20Nov 24, 2025Updated 5 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 9 months ago
- ☆65Sep 13, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Apr 30, 2025Updated last year
- ☆406Nov 23, 2025Updated 5 months ago
- ☆37Feb 20, 2026Updated 2 months ago
- End-to-end analysis of spatial multi-omics data☆111Jan 26, 2026Updated 3 months ago
- Modeling complex perturbations with CellFlow☆137Updated this week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆356Feb 1, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 3 months ago
- ☆437Jan 21, 2026Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Arc Virtual Cell Atlas☆515Feb 12, 2026Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆31Dec 3, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- Python playground for cell-type-specific biology☆12Apr 8, 2026Updated 3 weeks ago
- Single-Cell Inference of Class Switch Recombination☆22Feb 11, 2026Updated 2 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆161Nov 23, 2025Updated 5 months ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Single cell omics biology annotations☆56Feb 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆82Jan 9, 2026Updated 3 months ago
- ☆164Jul 3, 2024Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆17Oct 5, 2024Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆54Jan 17, 2022Updated 4 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆124Updated this week
- Registries for biological ontologies.☆25Apr 23, 2026Updated last week
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆202Mar 9, 2026Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆132May 5, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- UCE is a zero-shot foundation model for single-cell gene expression data☆253Feb 26, 2026Updated 2 months ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆33Mar 1, 2026Updated 2 months ago
- ☆316Mar 18, 2024Updated 2 years ago