🏃 The go-to single-cell Foundation Model
☆164Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated 2 months ago
- 🏃🏃 Your next-gen single-cell Foundation Model☆41Sep 26, 2026Updated last month
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 5 months ago
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- ☆128Aug 18, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆420Feb 1, 2025Updated last year
- ☆433Nov 23, 2025Updated 11 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year
- ☆15Nov 5, 2025Updated 11 months ago
- Single cell omics biology annotations☆63Sep 2, 2026Updated last month
- Single-cell perturbation analysis☆355Updated this week
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- ☆42Jun 8, 2026Updated 4 months ago
- ☆1,662Apr 29, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated 4 months ago
- Code and example of the D-SPIN framework☆45Updated this week
- ☆86Jan 9, 2026Updated 9 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆72Updated this week
- ☆55Jun 16, 2025Updated last year
- Single-cell perturbation effects prediction benchmark☆107Oct 22, 2026Updated last week
- ☆101Aug 10, 2026Updated 2 months ago
- Modeling complex perturbations with CellFlow☆165Updated this week
- GeneCompass☆125Sep 4, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆25Jan 31, 2026Updated 9 months ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆52Jan 30, 2026Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression data☆351Jul 8, 2026Updated 3 months ago
- Arc Virtual Cell Atlas☆647Updated this week
- inferring regulatory cellular dynamics☆200Oct 21, 2026Updated last week
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆223May 12, 2026Updated 5 months ago
- ☆33Jan 22, 2025Updated last year
- ☆13Sep 30, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A novel method for single-cell diagonal integration: scConfluence☆30Nov 3, 2025Updated 11 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Oct 5, 2026Updated 3 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- Code for "Foundation Models Improve Perturbation Response Prediction"☆30Oct 22, 2026Updated last week
- ☆24Aug 17, 2026Updated 2 months ago
- ☆36Sep 7, 2026Updated last month
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆114Apr 7, 2026Updated 6 months ago