ArpiarSaundersLab / annsqlLinks
The AnnSQL package enables SQL based queries on AnnData objects.
☆39Updated 4 months ago
Alternatives and similar repositories for annsql
Users that are interested in annsql are comparing it to the libraries listed below
Sorting:
- Single cell analysis in Javascript☆22Updated last month
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆83Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated 2 weeks ago
- Builds a PEP from SRA or GEO accessions☆54Updated last month
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated last month
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- R API and htmlwidget for Vitessce☆44Updated 4 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated 2 weeks ago
- ☆44Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 7 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 3 years ago
- A fast dataloader for bigwig files made for machine learning☆28Updated 3 weeks ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Universal Single-Cell Genomics Preprocessing package☆48Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Full annotation using shape-constrained trees☆27Updated 2 years ago
- Python bindings for SingleR☆13Updated 3 weeks ago
- ☆48Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- VDJ Clonotyping & Analysis Tools☆50Updated 9 months ago
- Access public biological ontologies.☆15Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 2 months ago
- A performant scientific image visualization system.☆36Updated last month
- Functional Associations using Variational Autoencoders☆40Updated 3 weeks ago
- Multi-omics factor analysis v2☆54Updated 2 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- ☆39Updated last month
- Explore and download data from the recount3 project☆37Updated 3 months ago