The AnnSQL package enables SQL based queries on AnnData objects.
☆41Aug 20, 2025Updated 9 months ago
Alternatives and similar repositories for annsql
Users that are interested in annsql are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆46May 25, 2026Updated 2 weeks ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Build contrasts for models defined with formulaic☆12Jun 1, 2026Updated last week
- ☆15Apr 7, 2026Updated 2 months ago
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- A high efficiency binary format for sequencing data☆102May 5, 2026Updated last month
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated last month
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58May 14, 2026Updated 3 weeks ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated 7 months ago
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- A performant scientific image visualization system.☆35Updated this week
- Spatial omics analysis and visualization library☆24Jun 1, 2026Updated last week
- factor models for omics data☆43Updated this week
- Multiple Genome Viewer☆12Sep 16, 2025Updated 8 months ago
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- Signac☆27Mar 6, 2023Updated 3 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- R package for WikiPathways API☆20Nov 3, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- Extended ComplexHeatmap☆12Jan 5, 2025Updated last year
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆14May 29, 2026Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- Read CRAM v3 and v2 in node or in the browser☆18Updated this week
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆22Jun 19, 2023Updated 2 years ago
- C++ API for various matrix types.☆15Updated this week
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- ☆12May 21, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆27Jun 2, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆67Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17Jun 1, 2026Updated last week
- ☆17Jan 6, 2025Updated last year
- Registries for biological ontologies.☆25Apr 23, 2026Updated last month