Alternatives and similar repositories for annsql

Users that are interested in annsql are comparing it to the libraries listed below

• jmschrei / bam2bw
  A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.
  ☆14Updated this week
• laminlabs / bionty
  Registries for biological entities, coupled to public ontologies.
  ☆16Updated last week
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆21Updated 9 months ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆20Updated last week
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated 2 months ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆41Updated 9 months ago
• cellatlas / human
  ☆44Updated 8 months ago
• alibaba / damo-creformer
  ☆14Updated this week
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆76Updated last month
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆108Updated 3 weeks ago
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆25Updated last week
• zhwm / RSparsePro_LD
  RSparsePro for robust fine-mapping in the presence of LD mismatch
  ☆12Updated 8 months ago
• AAKoksoy / TLS-Finder
  An algorithm in Python that locates the TLS and lymphoid aggregates in tissues using immune cell coordinates
  ☆9Updated 3 weeks ago
• flekschas / enhancer-gene-vis
  A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
  ☆12Updated 2 years ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated last year
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆47Updated last week
• korsunskylab / tessera
  ☆13Updated 2 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆35Updated last week
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 2 months ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆49Updated 2 months ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 4 months ago
• NygenAnalytics / CyteType
  Agentic Cell type annotation for Anndata objects
  ☆35Updated last week
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆53Updated 10 months ago
• HCA-integration / scAtlasTb
  (aka sc-atlasing-toolbox) Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆35Updated 2 weeks ago