Alternatives and similar repositories for annsql

Users that are interested in annsql are comparing it to the libraries listed below

• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated 2 weeks ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆32Updated last week
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 3 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆52Updated 3 weeks ago
• jmschrei / bam2bw
  A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.
  ☆16Updated 3 weeks ago
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆21Updated last week
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 5 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• NygenAnalytics / CyteType
  Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format
  ☆35Updated this week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• regulatory-genomics / precellar
  ☆34Updated last week
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated 2 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 2 months ago
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated 3 weeks ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆58Updated 4 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 4 months ago
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆29Updated last month
• laminlabs / bionty
  Registries for basic biological entities, coupled to public ontologies.
  ☆16Updated last week
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆77Updated last month
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆40Updated 3 months ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆57Updated 3 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 2 weeks ago
• kaizhang / anndata-rs
  ☆32Updated 2 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆47Updated this week
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 2 years ago
• HCA-integration / scAtlasTb
  (aka sc-atlasing-toolbox) Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆37Updated last week
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆47Updated 9 months ago
• sbooeshaghi / single-cell-vocabulary
  ☆26Updated last year