scverse / genomic-features
Genomic Features in Python from BioConductor's AnnotationHub
☆19Updated this week
Related projects ⓘ
Alternatives and complementary repositories for genomic-features
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- A python package for chromVAR☆27Updated last year
- High-definition modeling of chromatin + transcriptomics data☆17Updated this week
- ☆15Updated 3 months ago
- ☆22Updated last month
- Multi-resolution Variational Inference☆22Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- ☆34Updated 6 months ago
- ☆37Updated last month
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Biology-centered data-driven quality control for scRNA-seq☆15Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆20Updated 11 months ago
- AnnData interoperability in R☆58Updated this week
- Dorothea package in Python☆11Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆12Updated 5 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 9 months ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- ☆38Updated last week
- CAST package☆23Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆49Updated last week
- ☆20Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 2 weeks ago
- scover☆22Updated last year
- Identification of spatial homogeneous regions☆18Updated last month
- Discovering de novo shared transcriptional programs in single cancer cells☆12Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 9 months ago