scverse / genomic-features
Genomic Features in Python from BioConductor's AnnotationHub
☆19Updated this week
Related projects ⓘ
Alternatives and complementary repositories for genomic-features
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- A python package for chromVAR☆27Updated last year
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated this week
- .h5mu files interface for Seurat☆26Updated 11 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆16Updated 3 months ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆20Updated 11 months ago
- High-definition modeling of chromatin + transcriptomics data☆18Updated 2 weeks ago
- Code for scKINETICS (ISMB 2023)☆20Updated last year
- ☆34Updated 6 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆28Updated this week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated last month
- scover☆22Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Multi-resolution Variational Inference☆22Updated last month
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- AnnData interoperability in R☆60Updated last week
- ☆25Updated last month
- Information-based dimensionality reduction☆29Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆17Updated this week
- A method for analyzing scATAC-seq experiments.☆23Updated last month
- Biology-centered data-driven quality control for scRNA-seq☆15Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 3 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆14Updated 5 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated 2 months ago
- Snakemake pipeline for microexon discovery and quantification☆19Updated last month
- ☆40Updated 3 weeks ago
- Discovering de novo shared transcriptional programs in single cancer cells☆12Updated last year