scverse / genomic-featuresLinks
Genomic Features in Python from BioConductor's AnnotationHub
☆22Updated this week
Alternatives and similar repositories for genomic-features
Users that are interested in genomic-features are comparing it to the libraries listed below
Sorting:
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆25Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated this week
- A python package for chromVAR☆28Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 3 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- Biology-centered data-driven quality control for scRNA-seq☆17Updated 2 years ago
- ☆35Updated 5 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- ☆44Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- High-definition modeling of chromatin + transcriptomics data☆24Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated 2 months ago
- Multi-omics factor analysis v2☆47Updated 9 months ago
- ☆13Updated 3 weeks ago
- ☆44Updated 9 months ago
- ☆22Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆24Updated 2 weeks ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17Updated 3 years ago
- .h5mu files interface for Seurat☆32Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆58Updated last month
- A method for analyzing scATAC-seq experiments.☆33Updated last month
- ☆40Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago