scverse / genomic-featuresLinks
Genomic Features in Python from BioConductor's AnnotationHub
☆22Updated last week
Alternatives and similar repositories for genomic-features
Users that are interested in genomic-features are comparing it to the libraries listed below
Sorting:
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 3 weeks ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated last week
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- ☆45Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- A python package for chromVAR☆30Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated last month
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- ☆44Updated 11 months ago
- An R package for performing cell typing in SMI and other single cell data☆40Updated 4 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- ☆37Updated 7 months ago
- Biology-centered data-driven quality control for scRNA-seq☆18Updated 2 years ago
- ☆41Updated last month
- Pipeline for designing custom probes against human genes☆18Updated 10 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 2 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- ☆22Updated 3 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 2 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 3 months ago
- .h5mu files interface for Seurat☆31Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 10 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated this week
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago