Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
☆61Jun 3, 2026Updated this week
Alternatives and similar repositories for annbatch
Users that are interested in annbatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Registry for scverse ecosystem packages☆37Updated this week
- Build contrasts for models defined with formulaic☆12Jun 1, 2026Updated last week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Automatically annotate cell types, consistently across samples.☆21Jun 1, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read fcs files.☆11Nov 13, 2025Updated 6 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jun 1, 2026Updated last week
- a dataloader to work with large single cell datasets from lamindb☆40May 20, 2026Updated 2 weeks ago
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- ☆40Feb 24, 2026Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆67Updated this week
- ☆10Dec 14, 2016Updated 9 years ago
- parallel differential expression for single-cell perturbation sequencing☆25Jun 1, 2026Updated last week
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34May 22, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Flow & mass cytometry analytics.☆60Jun 1, 2026Updated last week
- ☆15Apr 7, 2026Updated 2 months ago
- Registries for biological ontologies.☆25Apr 23, 2026Updated last month
- Implementation of Zarr file format in Rust☆30May 24, 2026Updated 2 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Jun 1, 2026Updated last week
- Distributed single-cell data analysis.☆39May 30, 2026Updated last week
- Data Science Operations (dso) command line tool☆47Jun 1, 2026Updated last week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17Jun 1, 2026Updated last week
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tutorials for learning scverse☆21Jun 1, 2026Updated last week
- Functional Associations using Variational Autoencoders☆42May 25, 2026Updated 2 weeks ago
- Efficient data structures and IO for whole slide image analysis☆27May 31, 2026Updated last week
- Network annotation visualization☆18May 21, 2025Updated last year
- Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing and visualizing spatial and molecular datasets. Code licens…☆35Updated this week
- Single-cell perturbation analysis☆322Updated this week
- Multimodal Data (.h5mu) implementation for Python☆122Jun 2, 2026Updated last week
- ☆47Jan 28, 2026Updated 4 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆53Dec 19, 2025Updated 5 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆372Jun 1, 2026Updated last week
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 4 months ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Dec 6, 2022Updated 3 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year