scverse / annbatchLinks
Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
☆24Updated this week
Alternatives and similar repositories for annbatch
Users that are interested in annbatch are comparing it to the libraries listed below
Sorting:
- Shadow objects for AnnData and MuData (experimental)☆11Updated 11 months ago
- Build contrasts for models defined with formulaic☆12Updated this week
- factor models for omics data☆32Updated this week
- Automatically annotate cell types, consistently across samples.☆18Updated this week
- Registries for biological ontologies.☆23Updated last week
- Slides and Notebooks for scverse 2024☆17Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated 2 weeks ago
- a dataloader to work with large single cell datasets from lamindb☆34Updated last month
- Distributed single-cell data analysis.☆35Updated last week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 4 months ago
- ☆15Updated 2 months ago
- Efficient data structures and IO for whole slide image analysis☆17Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Updated last year
- Static plotting for spatialdata☆73Updated last week
- Registry for scverse ecosystem packages☆32Updated this week
- Visualising data frames as funky heatmaps 📊, the Python implementation☆23Updated last year
- ☆19Updated 3 weeks ago
- Create PyTorch Datasets from AnnData☆21Updated last month
- Deep exponential families for single-cell data.☆20Updated 3 weeks ago
- The complete FlowSOM package known from R, now available in Python!☆27Updated last week
- Python API and Jupyter widget for Vitessce☆61Updated last week
- ☆40Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated this week
- Optimal gating strategies for flow and mass cytometry.☆16Updated 3 months ago
- ☆22Updated last month
- Finding the causality in biological pathways☆14Updated 2 years ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆86Updated 2 months ago