Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
☆67Jul 14, 2026Updated last week
Alternatives and similar repositories for annbatch
Users that are interested in annbatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Updated this week
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- Fast array utilities☆15Updated this week
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆386Updated this week
- Open-source data management for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & …☆275Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆71Updated this week
- ☆67Sep 13, 2024Updated last year
- Registry for scverse ecosystem packages☆37Updated this week
- Single-cell differential expression☆19Apr 23, 2026Updated 2 months ago
- Registries for biological ontologies.☆26Jul 12, 2026Updated last week
- ☆17May 21, 2026Updated 2 months ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆51Jan 30, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 8 months ago
- Single-cell spatial omics analysis that makes you happy!☆70Jul 13, 2026Updated last week
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆72Jul 14, 2026Updated last week
- AnnData interoperability in R☆192Updated this week
- ☆24Jul 7, 2026Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatial omics analysis and visualization library☆27Updated this week
- ☆25Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Jul 13, 2026Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆143Jul 8, 2026Updated last week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- Toolbox for single-cell data analysis on sample level☆25Jul 14, 2026Updated last week
- Cookiecutter template for scverse☆89Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last week
- Single-cell perturbation analysis☆338Updated this week
- ☆21Jul 10, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Jul 13, 2026Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated last week
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- ☆35Jun 11, 2026Updated last month