AnnData interoperability in R
☆196Sep 18, 2026Updated this week
Alternatives and similar repositories for anndataR
Users that are interested in anndataR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆103Nov 24, 2025Updated 9 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- reticulate-free single cell format conversion☆220Jul 10, 2026Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆229Jun 13, 2026Updated 3 months ago
- Scaling Single Cell Analysis to Millions of Cells☆305Jul 13, 2026Updated 2 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- Fast array utilities☆15Updated this week
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 4 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆29Feb 26, 2026Updated 6 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆134Updated this week
- Methods to discover gene programs on single-cell data☆210Updated this week
- Single-cell perturbation analysis☆345Updated this week
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 5 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆110Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 10 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆325Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 7 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆137Aug 11, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 2 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆315Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆204Mar 9, 2024Updated 2 years ago
- Pareto Task Inference in Python☆23Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆249Aug 7, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆671Mar 4, 2026Updated 6 months ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- ☆28Updated this week
- ☆13Aug 30, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago