scverse / anndataRLinks
AnnData interoperability in R
☆91Updated last week
Alternatives and similar repositories for anndataR
Users that are interested in anndataR are comparing it to the libraries listed below
Sorting:
- Latent Embedding Multivariate Regression☆94Updated 9 months ago
- From geospatial to spatial -omics☆95Updated last week
- Cell type pipes for R☆51Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated last year
- Annotated multivariate observation data in R☆50Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Normalize CITEseq Data☆66Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- ☆88Updated last month
- R package for single cell and other data analysis using diffusion maps☆88Updated 9 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 months ago
- R package for semi-supervised single-cell data integration☆87Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- ☆41Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆75Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Single Cell Cluster Evaluation☆96Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated 3 weeks ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 3 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆44Updated 2 weeks ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 3 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago