scverse / anndataRLinks
AnnData interoperability in R
☆86Updated this week
Alternatives and similar repositories for anndataR
Users that are interested in anndataR are comparing it to the libraries listed below
Sorting:
- Latent Embedding Multivariate Regression☆93Updated 8 months ago
- From geospatial to spatial -omics☆95Updated 4 months ago
- Annotated multivariate observation data in R☆50Updated 2 months ago
- Cell type pipes for R☆51Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- ☆88Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 7 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆86Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last week
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 3 months ago
- R package for semi-supervised single-cell data integration☆86Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- ☆41Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 4 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated 4 months ago
- Normalize CITEseq Data☆66Updated 3 months ago
- Single Cell Cluster Evaluation☆95Updated 4 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆74Updated last week
- Pan-Cancer Single Cell Classifier☆74Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- Multi-resolution Variational Inference☆23Updated last month
- R package for single cell and other data analysis using diffusion maps☆88Updated 8 months ago
- ☆41Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆55Updated 3 months ago