AnnData interoperability in R
β199Oct 7, 2026Updated this week
Alternatives and similar repositories for anndataR
Users that are interested in anndataR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multimodal Data (.h5mu) implementation for Pythonβ134Updated this week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. π§¬πβ103Nov 24, 2025Updated 10 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysisβ400Updated this week
- reticulate-free single cell format conversionβ221Jul 10, 2026Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.β312Jun 30, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- β231Jun 13, 2026Updated 3 months ago
- Scaling Single Cell Analysis to Millions of Cellsβ307Jul 13, 2026Updated 2 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverseβ71Oct 2, 2026Updated last week
- Fast array utilitiesβ15Oct 2, 2026Updated last week
- Conversion between scRNA-seq objectsβ209May 5, 2026Updated 5 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patientsβ15Jul 3, 2026Updated 3 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in Rβ19Updated this week
- A modular tool for proportion analysis in single-cell sequencing dataβ28Feb 26, 2026Updated 7 months ago
- Genomic Features in Python from BioConductor's AnnotationHubβ22Sep 28, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell perturbation analysisβ347Updated this week
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in Rβ134Updated this week
- Methods to discover gene programs on single-cell dataβ211Sep 18, 2026Updated 3 weeks ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)β93Apr 15, 2026Updated 5 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programsβ113Sep 17, 2026Updated 3 weeks ago
- Framework for sensitive DE testing (using neighbourhoods)β78Nov 11, 2025Updated 10 months ago
- Learning meaningful representations of genesβ21Jul 7, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transβ¦β200Aug 12, 2025Updated last year
- Slides and Notebooks for scverse 2024β16Sep 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial datβ¦β333Sep 19, 2026Updated 3 weeks ago
- A package to help convert different single-cell data formats to each otherβ471Feb 20, 2026Updated 7 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq dataβ139Aug 11, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing dataβ272Updated this week
- LIANA+: an all-in-one framework for cell-cell communicationβ319Sep 24, 2026Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.β423Sep 12, 2026Updated 3 weeks ago
- AUCell: score single cells with gene regulatory networksβ206Mar 9, 2024Updated 2 years ago
- Pareto Task Inference in Pythonβ23Updated this week
- LIANA: a LIgand-receptor ANalysis frAmeworkβ252Aug 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomicsβ676Mar 4, 2026Updated 7 months ago
- CellRank: dynamics from multi-view single-cell dataβ457Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metricsβ97Updated this week
- Automatically annotate cell types, consistently across samples.β30Updated this week
- β28Updated this week
- β13Aug 30, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolutionβ108Sep 10, 2024Updated 2 years ago