Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data
☆24May 2, 2026Updated last month
Alternatives and similar repositories for plaid
Users that are interested in plaid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 10 months ago
- ☆15Oct 16, 2025Updated 7 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 7 months ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 6 years ago
- Methods to discover gene programs on single-cell data☆191Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆11Jan 12, 2024Updated 2 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 4 months ago
- ☆37Jun 2, 2025Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ☆17Jul 13, 2024Updated last year
- Code for paired TCR data analysis from TIRTL-seq experiments☆13Nov 24, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Registries for biological ontologies.☆25Apr 23, 2026Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- python API to the CoGAPS NMF package☆21May 19, 2025Updated last year
- ☆13Jun 6, 2024Updated 2 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Analytical Platform Shiny Server • This repository is defined and managed in Terraform☆23Apr 18, 2024Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆34Sep 3, 2025Updated 9 months ago
- ☆15Feb 12, 2026Updated 3 months ago
- ☆40Jun 24, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12May 11, 2024Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆15Apr 5, 2025Updated last year
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆24Jul 11, 2021Updated 4 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 2 years ago
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- A simple collection of well working NLP models (Keras, H2O, StarSpace) tuned and benchmarked on a variety of datasets.☆18Mar 8, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package to analyze single-cell V(D)J data☆29Nov 13, 2023Updated 2 years ago
- Cell type pipes for R☆53Jan 27, 2024Updated 2 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21May 21, 2026Updated 3 weeks ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- TF-DNA-binding assay analysis pipeline☆15Aug 25, 2020Updated 5 years ago
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆22May 8, 2024Updated 2 years ago