YosefLab / scib-metricsLinks
Accelerated, Python-only, single-cell integration benchmarking metrics
☆62Updated this week
Alternatives and similar repositories for scib-metrics
Users that are interested in scib-metrics are comparing it to the libraries listed below
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 4 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- ☆80Updated 11 months ago
- Perturbation Analysis in the scverse ecosystem.☆185Updated this week
- single cell foundation model for Gene network inference and more☆90Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆171Updated 11 months ago
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆44Updated this week
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 5 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 4 months ago
- CZ CELLxGENE Discover Census☆104Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆100Updated 4 months ago
- Multi-omic velocity inference☆110Updated 8 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆133Updated 2 years ago
- ☆59Updated 10 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆201Updated 2 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated last month
- ☆55Updated last month
- End-to-end analysis of spatial multi-omics data☆81Updated last week
- A python port of the R package SCTransform:☆20Updated 4 years ago
- ☆47Updated last year
- Multi-omic single-cell optimal transport tools☆164Updated this week
- single cell foundation model for Gene network inference and more☆17Updated 3 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- Predict RNA velocity through deep learning☆70Updated last year
- ☆48Updated last month
- ☆34Updated 2 months ago