SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) datasets through precomputed gene attribution scores.
☆47May 27, 2026Updated 2 months ago
Alternatives and similar repositories for SIGnature
Users that are interested in SIGnature are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Jan 22, 2025Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆258Mar 14, 2026Updated 4 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Read and Write RDS files, in Python☆28Updated this week
- ☆23Apr 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆105Mar 16, 2026Updated 4 months ago
- ☆33Aug 3, 2026Updated last week
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 2 months ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 6 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- Store collections of experimental data based on TileDB☆11Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆182Feb 25, 2025Updated last year
- ☆18Oct 22, 2025Updated 9 months ago
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆38Dec 18, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 7 months ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 4 months ago
- Causal Differential Networks (ICML 2025)☆16Jun 3, 2025Updated last year
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 10 months ago
- ☆158Nov 6, 2025Updated 9 months ago
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆36Updated this week
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 3 months ago
- Code and documentation for the curation of cellxgene datasets☆58Updated this week
- ☆17Jul 12, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clone of the Bioconductor repository for the scran package.☆48May 20, 2026Updated 2 months ago
- ☆38Jun 8, 2026Updated 2 months ago
- Code and example of the D-SPIN framework☆39Aug 5, 2026Updated last week
- CZ CELLxGENE Discover Census☆129Aug 4, 2026Updated last week
- Pareto Task Inference in Python☆23Updated this week
- parallel differential expression for single-cell perturbation sequencing☆27Jul 14, 2026Updated 3 weeks ago
- ☆21Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆10Aug 29, 2012Updated 13 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆51Jul 10, 2026Updated last month
- ☆72Jan 18, 2023Updated 3 years ago
- Automatically annotate cell types, consistently across samples.☆27Updated this week
- ☆24Feb 22, 2023Updated 3 years ago
- Vector representations of gene co-expression in single cell RNAseq.☆36Jun 7, 2026Updated 2 months ago
- Biwhitened PCA☆15Mar 18, 2026Updated 4 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆37Mar 1, 2026Updated 5 months ago