Alternatives and similar repositories for celcomen

Users that are interested in celcomen are comparing it to the libraries listed below

• suinleelab / contrastiveVI
  ☆56Updated last year
• theislab / multicpa
  ☆15Updated 3 years ago
• Genentech / pascient
  ☆17Updated 5 months ago
• KlugerLab / SIMVI
  ☆13Updated 3 months ago
• theislab / scTab
  ☆61Updated last year
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆32Updated 2 years ago
• theislab / prophet
  ☆35Updated last week
• dpeerlab / ENVI
  ☆51Updated 4 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆37Updated last year
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated last week
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated last week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆51Updated last week
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆21Updated 4 months ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 2 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆69Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆54Updated 2 months ago
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆11Updated this week
• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated last month
• nitzanlab / biolord
  ☆84Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 3 weeks ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆59Updated 2 years ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 2 months ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆67Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆15Updated 11 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆54Updated this week
• vandijklab / CINEMA-OT
  ☆34Updated 5 months ago