Alternatives and similar repositories for celcomen

Users that are interested in celcomen are comparing it to the libraries listed below

• suinleelab / contrastiveVI
  ☆60Updated last year
• Genentech / pascient
  ☆18Updated 9 months ago
• KlugerLab / SIMVI
  ☆15Updated 7 months ago
• theislab / scTab
  ☆62Updated last year
• theislab / multicpa
  ☆15Updated 3 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆77Updated last year
• sldyns / SpaHDmap
  Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
  ☆16Updated 3 weeks ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆41Updated last year
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 3 weeks ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated 2 weeks ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆21Updated 6 months ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆69Updated 2 years ago
• TencentAILabHealthcare / pysodb
  ☆28Updated 2 years ago
• dpeerlab / ENVI
  ☆52Updated 3 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 6 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆77Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆26Updated 10 months ago
• theislab / prophet
  ☆38Updated last month
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated this week
• const-ae / linear_perturbation_prediction-Paper
  ☆69Updated 6 months ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆37Updated 11 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆52Updated 5 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆62Updated 2 years ago
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆72Updated 2 months ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆22Updated 7 months ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆32Updated 3 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago