Alternatives and similar repositories for mplscience

Users that are interested in mplscience are comparing it to the libraries listed below

• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆79Updated last week
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated this week
• theislab / moscot
  Multi-omic single-cell optimal transport tools
  ☆182Updated last week
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆50Updated 10 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• atarashansky / SCTransformPy
  A python port of the R package SCTransform:
  ☆21Updated 4 years ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated last year
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆67Updated last month
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated this week
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆30Updated this week
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated 3 weeks ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆56Updated this week
• lilab-bcb / harmony-pytorch
  ☆59Updated 6 months ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆62Updated 3 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆104Updated this week
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆32Updated 2 years ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆77Updated 9 months ago
• nitzanlab / biolord
  ☆88Updated last year
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆34Updated 9 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 5 months ago
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆57Updated 6 months ago
• theislab / prophet
  ☆38Updated last month
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆170Updated 3 years ago
• OleksiiR / cSTAR_Nature
  Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.
  ☆15Updated 3 years ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆31Updated this week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆29Updated 2 weeks ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆55Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆72Updated 2 years ago