adamgayoso / mplscience
Matplotlib style for scientific publications
☆13Updated 3 weeks ago
Alternatives and similar repositories for mplscience:
Users that are interested in mplscience are comparing it to the libraries listed below
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated last week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆63Updated last month
- Distributed single-cell data analysis.☆29Updated this week
- ☆51Updated last week
- pseudobulking on an AnnData object☆29Updated last week
- A python port of the R package SCTransform:☆19Updated 3 years ago
- a dataloader to work with large single cell datasets from lamindb☆22Updated this week
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated 11 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆24Updated this week
- single cell foundation model for Gene network inference and more☆15Updated 6 months ago
- Python implementation of the Slingshot pseudotime algorithm☆59Updated 10 months ago
- ☆14Updated last year
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- ☆29Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆38Updated last week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Single cell omics biology annotations☆50Updated 2 weeks ago
- ☆23Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆20Updated last month
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- A method for analyzing scATAC-seq experiments.☆27Updated 3 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- ☆45Updated 2 years ago
- A set of files to do genomics analysis on python☆18Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆45Updated last week