adamgayoso / mplscienceView external linksLinks
Matplotlib style for scientific publications
☆14Jan 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for mplscience
Users that are interested in mplscience are comparing it to the libraries listed below
Sorting:
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 9 months ago
- Simple scVI implementation☆12Jan 19, 2026Updated 3 weeks ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated last year
- Registries for biological ontologies.☆23Feb 9, 2026Updated last week
- ☆23Oct 6, 2025Updated 4 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆63Feb 5, 2026Updated last week
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 4 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Mar 27, 2025Updated 10 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Nov 1, 2025Updated 3 months ago
- ☆13Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆86Updated this week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- Universal Single-Cell Genomics Preprocessing package☆48Feb 8, 2026Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆83Jan 23, 2026Updated 3 weeks ago
- A method for analyzing scATAC-seq experiments.☆34Jun 20, 2025Updated 7 months ago
- pseudobulking on an AnnData object☆34Mar 14, 2025Updated 11 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆96Nov 13, 2025Updated 3 months ago
- Distributed single-cell data analysis.☆38Feb 10, 2026Updated last week
- ☆10Aug 29, 2023Updated 2 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- ☆10Dec 4, 2023Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆46Jan 19, 2026Updated 3 weeks ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- ☆42Updated this week
- ☆10Jun 25, 2021Updated 4 years ago
- ☆27Feb 4, 2026Updated last week
- Store collections of experimental data based on TileDB☆12Feb 9, 2026Updated last week
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated last month
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 5 months ago
- Models and datasets for perturbational single-cell omics☆171Aug 19, 2022Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 8, 2026Updated last week
- Single-cell multi-omics integration using Optimal Transport☆50Aug 14, 2025Updated 6 months ago
- MCP server for single cell analysis☆12May 15, 2025Updated 9 months ago
- 🧪 Optimized protocol for m6A-SAC-seq☆11Jun 16, 2025Updated 8 months ago