Matplotlib style for scientific publications
☆15Oct 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for mplscience
Users that are interested in mplscience are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple scVI implementation☆13Oct 19, 2026Updated 2 weeks ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆37Jan 4, 2022Updated 4 years ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆25Oct 6, 2026Updated 3 weeks ago
- Container class to represent genomic locations and support genomic analysis☆28Oct 26, 2026Updated last week
- ☆27Mar 31, 2026Updated 7 months ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 5 years ago
- Manage biological ontologies.☆27Oct 7, 2026Updated 3 weeks ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Oct 26, 2026Updated last week
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 3 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆22Updated this week
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- Takes excel file output from qPCR (Quantstudio3, ABI) and sample labels. Optionally analyzes standard curves and plots CT, Tms and absolu…☆12Jul 25, 2025Updated last year
- Dataloader for applying sequence models to personalized genomics☆31Oct 26, 2026Updated last week
- ☆15May 1, 2026Updated 6 months ago
- Models and datasets for perturbational single-cell omics☆186Aug 19, 2022Updated 4 years ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,719Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 8 months ago
- code repository for Hutchins et al. "Reconstructing signaling history of single cells via statistical inference" (2025)☆13Sep 19, 2026Updated last month
- pseudobulking on an AnnData object☆39Jun 17, 2026Updated 4 months ago
- ☆13Dec 22, 2025Updated 10 months ago
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 4 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆88Jun 4, 2026Updated 4 months ago
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆36Nov 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Jul 21, 2019Updated 7 years ago
- ☆16Apr 8, 2025Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 8 months ago
- Dynamic sequence track for HiGlass☆12May 3, 2022Updated 4 years ago
- This is the code for our paper DAAIN: Detection of Anomalous and AdversarialInput using Normalizing Flows☆15Jun 1, 2021Updated 5 years ago
- Hermes desktop achievements: full achievements page + sidebar nav + statusbar score chip, backed by the bundled hermes-achievements plugi…☆16Aug 6, 2026Updated 2 months ago