Registry for scverse ecosystem packages
☆36Apr 1, 2026Updated last week
Alternatives and similar repositories for ecosystem-packages
Users that are interested in ecosystem-packages are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆33Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆23Mar 30, 2026Updated last week
- Registries for biological ontologies.☆25Mar 18, 2026Updated 3 weeks ago
- Build contrasts for models defined with formulaic☆12Updated this week
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108Mar 30, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Updated this week
- AnnData interoperability in R☆167Apr 2, 2026Updated last week
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Mar 16, 2026Updated 3 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 8 months ago
- Cookiecutter template for scverse☆90Updated this week
- Static plotting for spatialdata☆76Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 5 months ago
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆22Jan 12, 2026Updated 2 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆349Mar 31, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Single-cell perturbation analysis☆303Updated this week
- ☆92Updated this week
- Single-cell spatial omics analysis that makes you happy!☆55Updated this week
- Multimodal Data (.h5mu) implementation for Python☆111Updated this week
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆15Mar 27, 2026Updated last week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Mar 30, 2026Updated last week
- ☆21Apr 1, 2026Updated last week
- Interactive visualization of spatial omics data☆81Mar 30, 2026Updated last week
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- Flow & mass cytometry analytics.☆60Updated this week
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated last month
- ☆24Feb 25, 2026Updated last month
- Python package for processing image-based profiling data☆137Updated this week
- Single-cell multi-omics integration using Optimal Transport☆51Aug 14, 2025Updated 7 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆30Feb 2, 2026Updated 2 months ago
- CZ CELLxGENE Discover Census☆118Jan 14, 2026Updated 2 months ago
- Morphological features from images and masks made easy.☆44Mar 31, 2026Updated last week