scverse / ecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
☆22Updated this week
Alternatives and similar repositories for ecosystem-packages:
Users that are interested in ecosystem-packages are comparing it to the libraries listed below
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- Identification of spatial homogeneous regions☆20Updated 3 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆19Updated last week
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- CAST package☆34Updated 6 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆31Updated 3 weeks ago
- ☆36Updated 7 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 5 months ago
- A python package for chromVAR☆27Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- Multi-resolution Variational Inference☆22Updated last month
- Slides and Notebooks for scverse 2024☆17Updated 7 months ago
- ☆26Updated 7 months ago
- ☆21Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- Multi-omics factor analysis v2☆44Updated 6 months ago
- Work with trained factor models in Python☆31Updated 6 months ago
- ☆13Updated 6 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week
- ☆53Updated last month
- ☆26Updated last year
- Automatically annotate cell types, consistently across samples.☆10Updated 2 weeks ago
- Test genes for Spatial Variation☆14Updated 4 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆45Updated 9 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 3 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated this week