Registry for scverse ecosystem packages
☆37Jul 19, 2026Updated this week
Alternatives and similar repositories for ecosystem-packages
Users that are interested in ecosystem-packages are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast array utilities☆15Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jul 13, 2026Updated last week
- Registries for biological ontologies.☆26Jul 12, 2026Updated last week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Jul 14, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Jul 13, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Cookiecutter template for scverse☆89Updated this week
- Nextflow version of Sopa - spatial omics pipeline and analysis☆18Updated this week
- The BioContextAI Registry for biomedical MCP servers☆21Jul 3, 2026Updated 2 weeks ago
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆386Updated this week
- Single-cell differential expression☆19Apr 23, 2026Updated 2 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- ☆100Jul 2, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 8 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- Static plotting for spatialdata☆82Jul 10, 2026Updated last week
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 8 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated 2 weeks ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 7 months ago
- ☆12Dec 14, 2021Updated 4 years ago
- Single-cell perturbation analysis☆338Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- Open-source data management for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & …☆275Updated this week
- Multimodal Data (.h5mu) implementation for Python☆127Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Jul 13, 2026Updated last week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Jul 13, 2026Updated last week
- ☆16Apr 7, 2026Updated 3 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated last week
- Single-cell spatial omics analysis that makes you happy!☆70Jul 13, 2026Updated last week
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆28Jan 12, 2026Updated 6 months ago
- ☆37Updated this week
- Tutorials for learning scverse☆22Jul 14, 2026Updated last week
- Flow & mass cytometry analytics.☆61Jul 13, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆45Jun 11, 2026Updated last month
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week