scverse / ecosystem-packagesLinks
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
☆27Updated this week
Alternatives and similar repositories for ecosystem-packages
Users that are interested in ecosystem-packages are comparing it to the libraries listed below
Sorting:
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated 2 weeks ago
- Identification of spatial homogeneous regions☆21Updated 7 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated 2 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆35Updated last week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 3 weeks ago
- CAST package☆40Updated 9 months ago
- ☆55Updated 3 months ago
- a dataloader to work with large single cell datasets from lamindb☆29Updated this week
- Slides and Notebooks for scverse 2024☆17Updated 11 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- A python package for chromVAR☆29Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Python package to perform normalization and variance-stabilization of single-cell data☆24Updated last month
- TACCO: Transfer of Annotations to Cells and their COmbinations☆52Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Multi-resolution Variational Inference☆23Updated 2 months ago
- CZ CELLxGENE Discover Census☆106Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆26Updated 2 years ago
- ☆20Updated this week
- ☆55Updated last week
- ☆44Updated 2 weeks ago
- Spatial One☆28Updated 9 months ago
- .h5mu files interface for Seurat☆32Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 3 months ago