laminlabs / lamindbLinks
A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, ontologies, LIMS, ELN.
☆212Updated this week
Alternatives and similar repositories for lamindb
Users that are interested in lamindb are comparing it to the libraries listed below
Sorting:
- CZ CELLxGENE Discover Census☆114Updated 2 weeks ago
- muon is a multimodal omics Python framework☆257Updated 3 weeks ago
- Single-cell perturbation analysis☆237Updated last week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆232Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated 2 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆286Updated 2 weeks ago
- Python package to perform enrichment analysis from omics data.☆245Updated this week
- Multimodal Data (.h5mu) implementation for Python☆105Updated 3 weeks ago
- Flow & mass cytometry analytics.☆58Updated 2 weeks ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆174Updated 3 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆206Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆255Updated 3 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆158Updated 10 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆59Updated 2 weeks ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆156Updated this week
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- Biological sequence analysis for the modern age.☆259Updated 3 weeks ago
- Reference mapping for single-cell genomics☆396Updated last month
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 6 months ago
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆194Updated last week
- Batch balanced KNN☆175Updated 2 years ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆119Updated this week
- 🏃 The go-to single-cell Foundation Model☆127Updated 2 weeks ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆246Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆417Updated last month
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆94Updated last month
- Episcanpy: Epigenomics Single Cell Analysis in Python☆150Updated last year
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated last month
- Unified knowledge-driven network inference from omics data☆90Updated 3 weeks ago
- ☆149Updated last year