laminlabs / lamindbLinks
A data framework for biology.
☆175Updated this week
Alternatives and similar repositories for lamindb
Users that are interested in lamindb are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆207Updated last week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆197Updated last week
- muon is a multimodal omics Python framework☆239Updated 3 months ago
- CZ CELLxGENE Discover Census☆103Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆234Updated this week
- Perturbation Analysis in the scverse ecosystem.☆182Updated 2 weeks ago
- Reference mapping for single-cell genomics☆370Updated last month
- LIANA+: an all-in-one framework for cell-cell communication☆218Updated this week
- Benchmarking analysis of data integration tools☆363Updated 5 months ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- Flow & mass cytometry analytics.☆52Updated this week
- Biological sequence analysis for the modern age.☆228Updated 2 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆198Updated 4 months ago
- Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…☆214Updated this week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆168Updated 11 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 4 months ago
- Single-cell epigenomics analysis tools☆263Updated 3 weeks ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆163Updated 4 months ago
- Scanpy Tutorials.☆215Updated this week
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆159Updated 2 weeks ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆218Updated 11 months ago
- Test genes for Spatial Variation☆172Updated last year
- A tool for semi-automatic cell type classification☆376Updated this week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆153Updated 4 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆333Updated 11 months ago
- Models and datasets for perturbational single-cell omics☆152Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 6 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆58Updated 8 months ago
- single cell foundation model for Gene network inference and more☆88Updated last week