Open-source data management for multimodal AI. Query, trace, and govern with a lineage-native, format-agnostic lakehouse for agents and teams. With support for biological formats and registries by the creators of Scanpy. 🍊YC S22
☆365Sep 3, 2026Updated this week
Alternatives and similar repositories for lamindb
Users that are interested in lamindb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Registries for biological ontologies.☆27Aug 3, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last week
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Fast array utilities☆15Updated this week
- Spatial and multiomic visualization and analysis library☆56Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆111Updated this week
- Automatically annotate cell types, consistently across samples.☆27Updated this week
- Static plotting for spatialdata☆85Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆264Updated this week
- Single-cell perturbation analysis☆337Updated this week
- ☆101Updated this week
- Build contrasts for models defined with formulaic☆13Updated this week
- An open and interoperable data framework for spatial omics data☆388Updated this week
- Registry for scverse ecosystem packages☆39Updated this week
- ☆23Jan 6, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Multimodal Data (.h5mu) implementation for Python☆133Updated this week
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 7 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated last month
- 🏃 The go-to single-cell Foundation Model☆157Aug 11, 2026Updated 3 weeks ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆291Updated this week
- Annotated data.☆768Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated last week
- Python package to perform enrichment analysis from omics data.☆293Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Light-weight Jupyter notebook tracker.☆33Apr 30, 2025Updated last year
- AnnData interoperability in R☆195Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- Single-cell spatial omics analysis that makes you happy!☆73Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- Multi-omic single-cell optimal transport tools☆216Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆154Aug 21, 2026Updated 2 weeks ago