Open-source data lakehouse for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. πYC S22
β268Jun 10, 2026Updated this week
Alternatives and similar repositories for lamindb
Users that are interested in lamindb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Registries for biological ontologies.β25Updated this week
- Python API and Jupyter widget for Vitessceβ67Jun 4, 2026Updated last week
- Genomic Features in Python from BioConductor's AnnotationHubβ23Jun 1, 2026Updated last week
- a dataloader to work with large single cell datasets from lamindbβ40May 20, 2026Updated 3 weeks ago
- Shadow objects for AnnData and MuData (experimental)β11Feb 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Store collections of experimental data based on TileDBβ11Updated this week
- Access public biological ontologies.β14Aug 7, 2024Updated last year
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.β253Updated this week
- Single-cell perturbation analysisβ327Updated this week
- Registry for scverse ecosystem packagesβ37Updated this week
- Interoperability between SpatialData and the Xenium Explorerβ26Jul 31, 2024Updated last year
- Simple scVI implementationβ13May 25, 2026Updated 2 weeks ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challeβ¦β89May 25, 2026Updated 2 weeks ago
- Automatically annotate cell types, consistently across samples.β23Updated this week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cookiecutter template for scverseβ90Updated this week
- Static plotting for spatialdataβ82Updated this week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.β85Jun 5, 2026Updated last week
- Light-weight Jupyter notebook tracker.β34Apr 30, 2025Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systemsβ39Jul 11, 2025Updated 11 months ago
- β98Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly muβ¦β44May 27, 2026Updated 2 weeks ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysisβ374Updated this week
- Annotated data.β750Updated this week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-omic single-cell optimal transport toolsβ212Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy imagesβ110Jun 1, 2026Updated last week
- Distributed single-cell data analysis.β39Updated this week
- β146Nov 6, 2025Updated 7 months ago
- Reference mapping for single-cell genomicsβ405Mar 21, 2026Updated 2 months ago
- Build contrasts for models defined with formulaicβ13Updated this week
- Read fcs files.β12Nov 13, 2025Updated 7 months ago
- Modeling complex perturbations with CellFlowβ144Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverseβ62Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell spatial omics analysis that makes you happy!β65Updated this week
- A multi-dimensional spatial image data structure for scientific Python.β44Aug 8, 2025Updated 10 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/β33Updated this week
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cytβ¦β28Apr 29, 2026Updated last month
- A fast dataloader for bigwig files made for machine learningβ29Dec 16, 2025Updated 5 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotatβ¦β162Jun 6, 2026Updated last week
- Python package to perform enrichment analysis from omics data.β269Jun 7, 2026Updated last week