icbi-lab / lucaLinks
Single-cell Lung Cancer Atlas with 1.2M cells
☆65Updated 7 months ago
Alternatives and similar repositories for luca
Users that are interested in luca are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆51Updated 2 years ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆108Updated 3 months ago
- Accurate and fast cell marker gene identification with COSG☆46Updated 5 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- ☆55Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆120Updated 11 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆75Updated 7 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Spatial transcriptomics of heart tissue☆90Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- ☆125Updated 3 years ago
- R implementation of GeneTrajectory☆63Updated last year
- ☆68Updated last year
- Spatial Cellular Estimator for Tumors☆57Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- trajectory inference☆104Updated 6 months ago
- Draw phylogenetic trees of tumor evolution☆81Updated 2 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆64Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- scWGCNA☆61Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated 3 weeks ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Codes for the scPLC project☆68Updated 2 years ago