icbi-lab / luca
Single-cell Lung Cancer Atlas with 1.2M cells
☆59Updated last year
Related projects ⓘ
Alternatives and complementary repositories for luca
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆37Updated 3 years ago
- ☆57Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- A tool for semi-automatic cell type harmonization and integration☆91Updated 9 months ago
- ☆107Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆58Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆90Updated 11 months ago
- ☆59Updated 4 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated this week
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- Codes for the scPLC project☆54Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆76Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆40Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆76Updated 2 months ago
- ☆23Updated 9 months ago
- Codes used in pan-T cell analysis☆46Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆67Updated 2 months ago
- Create cisTarget databases☆41Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆44Updated last year
- ☆28Updated 2 years ago
- ☆47Updated 4 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆35Updated 5 months ago
- Spatial Cellular Estimator for Tumors☆41Updated this week
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 4 months ago
- Code repository for single cell RNA-seq☆32Updated 4 years ago