owkin / fedpydeseq2Links
A federated implementation of PyDESeq2, based on Substra.
☆15Updated last week
Alternatives and similar repositories for fedpydeseq2
Users that are interested in fedpydeseq2 are comparing it to the libraries listed below
Sorting:
- Access & manage biological ontologies.☆20Updated last week
- A fast dataloader for bigwig files made for machine learning☆28Updated this week
- Multimodal Data (.h5mu) implementation for Python☆98Updated 3 weeks ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆70Updated last week
- a dataloader to work with large single cell datasets from lamindb☆29Updated this week
- ☆91Updated last week
- CZ CELLxGENE Discover Census☆113Updated this week
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆22Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated 2 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆53Updated this week
- Flow & mass cytometry analytics.☆56Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 3 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Multi-omics factor analysis v2☆54Updated 3 weeks ago
- Single-cell multi-omics integration using Optimal Transport☆48Updated 3 months ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆112Updated last week
- Build contrasts for models defined with formulaic☆13Updated last week
- Code and documentation for the curation of cellxgene datasets☆49Updated last week
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 8 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 6 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- bioinformatics plotting and tools☆59Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 4 months ago
- ☆61Updated last year
- ☆26Updated 5 months ago
- ☆38Updated 2 weeks ago
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- ☆15Updated 3 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆82Updated last month
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆30Updated this week