owkin / fedpydeseq2
A federated implementation of PyDESeq2, based on Substra.
☆9Updated last week
Alternatives and similar repositories for fedpydeseq2:
Users that are interested in fedpydeseq2 are comparing it to the libraries listed below
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆68Updated 2 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆28Updated last month
- code to run sei and obtain sei and sequence class predictions☆97Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆50Updated 4 months ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆114Updated last week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated this week
- Flow & mass cytometry analytics.☆43Updated last week
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆15Updated 3 months ago
- ☆54Updated 3 months ago
- CZ CELLxGENE Discover Census☆96Updated last week
- bioinformatics plotting and tools☆55Updated 8 months ago
- ☆46Updated 8 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆66Updated this week
- Knowledge-primed neural networks☆35Updated last year
- Normalization of RNA-seq gene expression☆83Updated 3 weeks ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆63Updated last year
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆70Updated 7 months ago
- ☆26Updated 3 weeks ago
- ☆39Updated 4 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆35Updated 3 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆53Updated this week
- ☆27Updated last month
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆57Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆38Updated last month
- Computational Optimization of DNA Activity (CODA)☆55Updated last month