A federated implementation of PyDESeq2, based on Substra.
☆18Oct 26, 2026Updated this week
Alternatives and similar repositories for fedpydeseq2
Users that are interested in fedpydeseq2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Illico is a python library performing fast and lightweight CPU-based wilcoxon rank-sum tests for single-cell RNASeq.☆22Oct 1, 2026Updated 3 weeks ago
- GrAIdient is a deep learning framework that aims at challenging the way we train and run models.☆80Jul 7, 2026Updated 3 months ago
- Build contrasts for models defined with formulaic☆13Oct 19, 2026Updated last week
- Python implementation of bulk RNAseq deconvolution algorithms☆47Jul 7, 2026Updated 3 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python code for implementing embeddings in the Wasserstein space of elliptical distributions☆11Jul 22, 2020Updated 6 years ago
- ☆10Feb 27, 2026Updated 8 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆169Jan 29, 2024Updated 2 years ago
- Analysis framework for morphological profiling data☆14Updated this week
- Closed form Entropic OT for balanced and unbalanced Gaussians☆17Sep 29, 2021Updated 5 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rust bindings for Philips Pathology SDK☆11Oct 21, 2026Updated last week
- Low-level Python library used to interact with a Substra network☆278Oct 14, 2024Updated 2 years ago
- ARA.v1.6.0☆10Jun 9, 2024Updated 2 years ago
- ☆15Mar 24, 2023Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- On synteny plots, intrinsic tangledness is real, layout tangledness is noise. This tool is for removing layout tangledness.☆22Updated this week
- ☆10Aug 21, 2025Updated last year
- ☆22Jun 12, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Aug 31, 2026Updated last month
- A high-level federated learning Python library used to run complex federated learning experiments at scale on a Substra network☆63Jul 17, 2026Updated 3 months ago
- Preserving Clusters and Correlations: Dimensionality reduction with exceptional high global structure preservation☆19Dec 23, 2025Updated 10 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆14Sep 17, 2026Updated last month
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- A integrated pipeline for estimating Convergent accelerated evolutionary conserved non-coding elements☆21Aug 29, 2026Updated 2 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 4 months ago
- Homology-based reference genome acquisition and comparison☆19Oct 16, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Web based DNA sequence editing and analysis tool☆13Sep 27, 2021Updated 5 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆13Oct 23, 2026Updated last week
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- A pipeline for processing data in a comparative genomics project.☆10Jan 18, 2021Updated 5 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- A computational tool for processing and differentiating PCR duplicates from biological duplicates☆10Sep 20, 2018Updated 8 years ago
- ☆23Oct 13, 2026Updated 2 weeks ago