A federated implementation of PyDESeq2, based on Substra.
☆17Jun 1, 2026Updated last week
Alternatives and similar repositories for fedpydeseq2
Users that are interested in fedpydeseq2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build contrasts for models defined with formulaic☆12Jun 1, 2026Updated last week
- Python code for implementing embeddings in the Wasserstein space of elliptical distributions☆11Jul 22, 2020Updated 5 years ago
- Sample representation benchmark for single-cell data☆13May 28, 2026Updated last week
- ☆10Feb 27, 2026Updated 3 months ago
- Python implementation of bulk RNAseq deconvolution algorithms☆46Jul 21, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Closed form Entropic OT for balanced and unbalanced Gaussians☆17Sep 29, 2021Updated 4 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 7 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆33May 27, 2026Updated 2 weeks ago
- ☆10Aug 21, 2025Updated 9 months ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆12Jun 12, 2024Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆27Apr 16, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Phylogenetic model exploration with deep learning☆12Mar 18, 2026Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆67Jun 4, 2026Updated last week
- An interactive web application tool that enables big data visualization of the 136k+ UK Road Accidents reported during 2016.☆10Oct 19, 2022Updated 3 years ago
- d3heatmap is a Python package to create interactive heatmaps based on d3js.☆11Sep 14, 2023Updated 2 years ago
- ☆20Sep 19, 2025Updated 8 months ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Jun 7, 2023Updated 3 years ago
- ☆15Oct 9, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Nov 24, 2025Updated 6 months ago
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆23Dec 2, 2025Updated 6 months ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆58Updated this week
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 9 months ago
- Automated Quantitative Trait Locus Analysis (AutoQTL)☆11Mar 5, 2024Updated 2 years ago
- Fast streams for block gzip files.☆14Nov 11, 2025Updated 6 months ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 8 months ago
- ☆19May 29, 2026Updated last week
- ☆12May 16, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 4 years ago
- Registries for biological ontologies.☆25Apr 23, 2026Updated last month
- Helpful workflow templates for GitHub Actions at Bayer (needs to be public for the templates)☆21Jul 24, 2024Updated last year
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Apr 16, 2026Updated last month
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated last month
- Benchmark gene representations from different model families☆16May 29, 2025Updated last year
- Variational Bayes for discrete undirected models☆11Aug 7, 2017Updated 8 years ago