Alternatives and similar repositories for fedpydeseq2:

Users that are interested in fedpydeseq2 are comparing it to the libraries listed below

• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆27Updated 6 months ago
• theislab / prophet
  ☆29Updated last week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆57Updated last week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆24Updated last week
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆98Updated this week
• scverse / spatialdata-notebooks
  ☆52Updated this week
• theislab / scTab
  ☆57Updated 6 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆38Updated this week
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆23Updated 4 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆44Updated 5 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆91Updated last week
• mostafavilabuw / EnformerAssessment
  ☆19Updated 7 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆42Updated this week
• portrai-io / CELLama
  CELLama Project
  ☆17Updated last month
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆71Updated last month
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆22Updated this week
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆57Updated this week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆46Updated this week
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆29Updated 2 months ago
• shuxiaoc / maxfuse
  ☆50Updated 10 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 11 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆42Updated last week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆54Updated this week
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆51Updated 3 weeks ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 2 months ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆60Updated last year
• lilab-bcb / harmony-pytorch
  ☆51Updated last week
• mhorlacher / rbpnet
  ☆18Updated last year
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆46Updated this week
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago