A federated implementation of PyDESeq2, based on Substra.
☆18Aug 3, 2026Updated last week
Alternatives and similar repositories for fedpydeseq2
Users that are interested in fedpydeseq2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Illico is a python library performing fast and lightweight wilcoxon rank-sum tests for single-cell RNASeq.☆21Jul 30, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Aug 3, 2026Updated last week
- GrAIdient is a deep learning framework that aims at challenging the way we train and run models.☆80Jul 7, 2026Updated last month
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python code for implementing embeddings in the Wasserstein space of elliptical distributions☆11Jul 22, 2020Updated 6 years ago
- ☆10Feb 27, 2026Updated 5 months ago
- Python implementation of bulk RNAseq deconvolution algorithms☆46Jul 7, 2026Updated last month
- Closed form Entropic OT for balanced and unbalanced Gaussians☆17Sep 29, 2021Updated 4 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 3 months ago
- Rust bindings for Philips Pathology SDK☆11Aug 1, 2026Updated last week
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated last month
- ☆20Jun 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆172Jan 29, 2024Updated 2 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆13Jul 3, 2026Updated last month
- ☆10Aug 21, 2025Updated 11 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- Preserving Clusters and Correlations: Dimensionality reduction with exceptional high global structure preservation☆18Dec 23, 2025Updated 7 months ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆12Jun 12, 2024Updated 2 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- An interactive web application tool that enables big data visualization of the 136k+ UK Road Accidents reported during 2016.☆10Oct 19, 2022Updated 3 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phylogenetic model exploration with deep learning☆12Jun 15, 2026Updated last month
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆27Aug 3, 2026Updated last week
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Jul 29, 2026Updated last week
- ☆22Nov 24, 2025Updated 8 months ago
- The MorphoCut image processing pipeline library☆13Aug 11, 2025Updated 11 months ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Jun 7, 2023Updated 3 years ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Aug 3, 2026Updated last week
- Python bindings for SingleR☆16May 6, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Oct 9, 2025Updated 10 months ago
- Robust and efficient analysis of single-cell perturbation studies☆15Updated this week
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 4 years ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 10 months ago
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 4 years ago
- Registries for biological ontologies.☆27Aug 3, 2026Updated last week
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 10 months ago