Alternatives and similar repositories for SuperCellCyto

Users that are interested in SuperCellCyto are comparing it to the libraries listed below

• marcovito / sma
  ☆15Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 9 months ago
• msraredon / Connectome
  ☆30Updated 3 years ago
• jranek / delve
  Feature selection for preserving biological trajectories in single-cell data
  ☆20Updated 7 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
  Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…
  ☆10Updated 5 years ago
• drewvoigt10 / cellcuratoR
  sharing interactive single cell gene expression visualizations from Seurat
  ☆11Updated 2 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆45Updated 7 months ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• soumelis-lab / ICELLNET
  ☆21Updated 5 months ago
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 6 months ago
• ChengxiangQiu / JAX_code
  The scripts used for analyzing JAX mouse dataset
  ☆26Updated last year
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last year
• jingshuw / descend
  ☆19Updated 4 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated 2 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated 3 months ago
• gustaveroussy / FG-Lab
  ☆13Updated 3 weeks ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• satijalab / Mixscale
  ☆23Updated 2 months ago
• MarioniLab / oor_design_reproducibility
  ☆16Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last year
• 3254c / scSurv
  a deep generative model for single-cell survival analysis
  ☆12Updated 3 weeks ago
• NMikolajewicz / scPipeline
  Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports
  ☆11Updated 2 years ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆21Updated 5 years ago
• shazanfar / scHOT
  ☆11Updated 2 years ago
• rosedu1 / deconvSeq
  deconvolution for RNAseq and bisulfite sequencing
  ☆11Updated 5 years ago
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆12Updated 2 years ago