phipsonlab / SuperCellCyto
SuperCell for Cytometry data
☆12Updated 11 months ago
Alternatives and similar repositories for SuperCellCyto:
Users that are interested in SuperCellCyto are comparing it to the libraries listed below
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆9Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆10Updated last year
- CellRank's reproducibility repository.☆14Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- ☆10Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 2 months ago
- ☆28Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- Pipeline for designing custom probes against human genes☆16Updated 4 months ago
- Hierarchical classification of cells☆23Updated 7 months ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Code, data and analysis for moslin.☆12Updated 5 months ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- RNA velocity validation☆23Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- scVI extension for unspliced RNA☆16Updated 2 months ago
- Gene Expression Decomposition and Integration☆17Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 3 months ago
- Vaeda method for computational doublet annotation☆16Updated 8 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆29Updated last month
- CAST package☆32Updated 5 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 5 months ago
- ☆10Updated 2 months ago