Alternatives and similar repositories for scDataLoader

Users that are interested in scDataLoader are comparing it to the libraries listed below

• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆36Updated this week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 2 weeks ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated 2 weeks ago
• theislab / scTab
  ☆61Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆30Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆50Updated last week
• atarashansky / SCTransformPy
  A python port of the R package SCTransform:
  ☆21Updated 4 years ago
• theislab / geome
  ☆15Updated 3 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated 3 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 8 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• lilab-bcb / harmony-pytorch
  ☆56Updated 5 months ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated 4 months ago
• theislab / prophet
  ☆37Updated last week
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated last month
• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆71Updated 2 years ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated 2 weeks ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆31Updated 2 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆32Updated last month
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆57Updated 4 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated 10 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆113Updated last week
• zcang / SpaOTsc
  ☆45Updated 3 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated 10 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 7 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 3 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆35Updated 2 years ago