jkobject / scDataLoader

Related projects: ⓘ

• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data.
  ☆14Updated this week
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆9Updated last month
• theislab / geome
  ☆16Updated 2 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆12Updated last year
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated last year
• laminlabs / bionty
  Registries for biological entities, coupled to public ontologies.
  ☆11Updated this week
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆24Updated 2 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆23Updated last week
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆10Updated this week
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆21Updated last year
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 7 months ago
• theislab / multicpa
  ☆13Updated 2 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆53Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆18Updated this week
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated 8 months ago
• AllonKleinLab / cospar
  ☆26Updated 8 months ago
• almaan / eggplant
  ☆20Updated 2 years ago
• ckmah / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆63Updated last week
• zcang / SpaOTsc
  ☆44Updated last year
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆14Updated last month
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆49Updated 3 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆26Updated 3 weeks ago
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated 5 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆26Updated last year
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆13Updated last month
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆41Updated this week
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆25Updated 3 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆19Updated this week
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆35Updated last week