a dataloader to work with large single cell datasets from lamindb
☆41May 20, 2026Updated 2 months ago
Alternatives and similar repositories for scDataLoader
Users that are interested in scDataLoader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Registries for biological ontologies.☆26Jul 12, 2026Updated last week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Jul 14, 2026Updated last week
- 🏃 The go-to single-cell Foundation Model☆154May 20, 2026Updated 2 months ago
- Distributed single-cell data analysis.☆40Updated this week
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆51Jan 30, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 2 months ago
- Code and documentation for the curation of cellxgene datasets☆57Updated this week
- Open-source data management for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & …☆275Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Multimodal Data (.h5mu) implementation for Python☆127Updated this week
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- Store collections of experimental data based on TileDB☆11Jul 13, 2026Updated last week
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- 🏃🏃 Your next-gen single-cell Foundation Model☆37Updated this week
- Read fcs files.☆12Nov 13, 2025Updated 8 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- CZ CELLxGENE Discover Census☆129Jun 25, 2026Updated 3 weeks ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Jun 29, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Light-weight Jupyter notebook tracker.☆34Apr 30, 2025Updated last year
- Diffusion model for gene regulatory network inference.☆30Updated this week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Jul 13, 2026Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Jul 13, 2026Updated last week
- ☆13Aug 30, 2025Updated 10 months ago
- ☆40Feb 24, 2026Updated 4 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A collection of self-contained fsspec-based filesystems☆18Jul 13, 2026Updated last week
- Comprehensive suite for evaluating perturbation prediction models☆146Updated this week
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- Efficient data structures and IO for whole slide image analysis☆27Jun 20, 2026Updated last month
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆35May 22, 2026Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆383Feb 1, 2025Updated last year
- Modeling complex perturbations with CellFlow☆151Updated this week