jkobject / scDataLoaderLinks
a dataloader to work with large single cell datasets from lamindb
☆26Updated this week
Alternatives and similar repositories for scDataLoader
Users that are interested in scDataLoader are comparing it to the libraries listed below
Sorting:
- Distributed single-cell data analysis.☆31Updated this week
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- ☆33Updated last month
- Registries for biological entities, coupled to public ontologies.☆16Updated this week
- ☆16Updated 11 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated last week
- single cell foundation model for Gene network inference and more☆17Updated this week
- Shadow objects for AnnData and MuData (experimental)☆12Updated 3 months ago
- Test genes for Spatial Variation☆14Updated 6 months ago
- Simple scVI implementation☆11Updated this week
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated 3 weeks ago
- A python package for chromVAR☆28Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year
- ☆59Updated 9 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated 2 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- ☆14Updated 2 years ago
- ☆54Updated last month
- ☆51Updated last week
- A python port of the R package SCTransform:☆20Updated 3 years ago
- ☆45Updated 2 years ago
- Create PyTorch Datasets from AnnData☆20Updated 3 months ago
- Flow & mass cytometry analytics.☆52Updated 2 weeks ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated 2 weeks ago