jkobject / scDataLoader
a dataloader to work with large single cell datasets from lamindb
☆21Updated this week
Alternatives and similar repositories for scDataLoader:
Users that are interested in scDataLoader are comparing it to the libraries listed below
- ☆29Updated this week
- Distributed single-cell data analysis.☆29Updated this week
- single cell foundation model for Gene network inference and more☆15Updated 6 months ago
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- Registries for biological entities, coupled to public ontologies.☆13Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- ☆16Updated 8 months ago
- single cell foundation model for Gene network inference and more☆56Updated this week
- Matplotlib style for scientific publications☆13Updated 2 weeks ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- ☆57Updated 6 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated 2 months ago
- A python package for chromVAR☆27Updated last year
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated 11 months ago
- ☆51Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated this week
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- Create PyTorch Datasets from AnnData☆20Updated 2 weeks ago
- ☆14Updated 2 years ago
- A python port of the R package SCTransform:☆19Updated 3 years ago
- Flow & mass cytometry analytics.☆46Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆35Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 3 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 4 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- Multimodal Data (.h5mu) implementation for Python☆91Updated this week